BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937824
Length=752
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49940.1 | Symbols: LBD38 | LOB domain-containing protein 38... 1000 0.0
AT5G67420.1 | Symbols: LBD37, ASL39 | LOB domain-containing pro... 475 2e-133
> AT3G49940.1 | Symbols: LBD38 | LOB domain-containing protein
38 | chr3:18514343-18515475 FORWARD LENGTH=1039
Length=1039
Score = 1000 bits (541), Expect = 0.0
Identities = 709/784 (90%), Gaps = 36/784 (5%)
Strand=Plus/Plus
Query 1 TAAAAGAATTTCTGATAATTATGAGTTGCAATGGTTGTCGAGTTCTTCGAAAAGGTTGCA 60
|||||| |||||||| ||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 104 TAAAAG-ATTTCTGAAAATAATGAGTTGCAATGGTTGTCGAGTTCTACGAAAAGGTTGCA 162
Query 61 GTGAGAATTGCATCCTCCGTCCATGTATTCAATGGATCGAATCACCTGAAGCTCAAGGCC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 GTGAGAATTGCATCCTCCGTCCATGTATTCAATGGATCGAATCACCTGAAGCTCAAGGCC 222
Query 121 ACGCCACCGTCTTCGTTGCTAAGTTCTTTGGCCGTGCCGGTCTCATGTCTTTCATCTCCG 180
|||||||||||||||| ||||||||||| |||||||||||| | ||||||||||||||||
Sbjct 223 ACGCCACCGTCTTCGTCGCTAAGTTCTTCGGCCGTGCCGGTTTAATGTCTTTCATCTCCG 282
Query 181 CCGTACCGGAATCTCAATGCCCTGCTTTGTTTCAGTCTTTGCTCTACGAAGCTTGTGGAA 240
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 283 CCGTACCGGAATCTCAATGCCCTGCTTTGTTTCAGTCTTTGCTATACGAAGCTTGTGGGA 342
Query 241 GAACTGTGAATCCGGTGAACGGAGCCGTCGGATTGTTGTGGACTGGGAACTGGAATATTT 300
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||
Sbjct 343 GAACTGTGAATCCGGTGAACGGAGCCGTCGGATTGTTGTGGACGGGGAATTGGAATGTTT 402
Query 301 GTCAAGCGGCGGTTGAGACGGTGCTTCGTGGTGGTTCTTTGAAACCGATACCGGAGCTTC 360
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 403 GTCAAGCGGCGGTTGAGACGGTGCTTCGTGGTGGTTCTTTAAAACCAATACCGGAGCTTC 462
Query 361 TTAACGGCGGTGGATTCGCCGGGTTTCCGTCTCCTACTTCCGATGAAGCTTCTGAGATTT 420
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 463 TTAACGGCGGTGGATTCGCCGGGTTTCCGTCTCCTACTTCCGACGAAGCTTCGGAGATCT 522
Query 421 GTACGGAAATGTTGAATCTACGAAAAGATGATGATTCCGGTGACCGTAATATTTACCATC 480
||||||||||||||||||||||||||| ||||||||||||||| || || ||||| ||||
Sbjct 523 GTACGGAAATGTTGAATCTACGAAAAGCTGATGATTCCGGTGATCGGAACATTTATCATC 582
Query 481 ACTGCCGATTCTCAAGCTCTAGATC-----CA-GATCAACGGCTTCTCCACCGAAACGGA 534
||||||||||||||||||||||||| || ||||||| |||||||| ||||||||||
Sbjct 583 ACTGCCGATTCTCAAGCTCTAGATCTAGATCAAGATCAACAGCTTCTCCGCCGAAACGGA 642
Query 535 AACGGTTATCGTCGGAGC-------T-CG----ATCT--ATCTCTG----ATTCCTACTT 576
|||| ||||||||||| | | || | || |||||| ||||||| ||
Sbjct 643 AACGATTATCGTCGGAACAACAACCTTCGTCGGAGCTTGATCTCTCTCTTATTCCTA-TT 701
Query 577 T-TCCGATTAAAACGGTGCCGTTTAAGGAAGATACACCGTCGATGTATTCGGAGGAGTCT 635
| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 702 TATCCGATTAAAACCTTGCCGTTTAAGGAAGATACACCGTCGATGTACTCGGAGGAGTCT 761
Query 636 GTCACGACGGTTTCGTTTCGAGACAACAACGCCGGTGATCGGTACGTACGC-G-G-CGGA 692
|| || ||||||||||||| | ||||||||||||||||||||||||||||| | | ||||
Sbjct 762 GTTACCACGGTTTCGTTTCAAAACAACAACGCCGGTGATCGGTACGTACGCTGCGGCGGA 821
Query 693 GGAGGAG-A--A--A-CGGCAAAGTTGCTCAACCTTTTCGCTTAAACGGCGTCGTTTTTG 746
||||||| | | | || ||||||||||||| || ||||||| ||||||||||||||||
Sbjct 822 GGAGGAGGAGGAGCAACGACAAAGTTGCTCAATCTCTTCGCTTGAACGGCGTCGTTTTTG 881
Query 747 TTAT 750
||||
Sbjct 882 TTAT 885
> AT5G67420.1 | Symbols: LBD37, ASL39 | LOB domain-containing protein
37 | chr5:26904289-26906026 REVERSE LENGTH=1651
Length=1651
Score = 475 bits (257), Expect = 2e-133
Identities = 428/509 (84%), Gaps = 17/509 (3%)
Strand=Plus/Plus
Query 11 TCTGATAATTATGAGTTGCAATGGTTGTCGAGTTCTTCGAAAAGGTTGCAGTGAGAATTG 70
||||| || ||||| ||||||||||| || ||||| || ||||||||||| ||||||||
Sbjct 603 TCTGA-AAAGATGAGCTGCAATGGTTGCCGTGTTCTCCGGAAAGGTTGCAGCGAGAATTG 661
Query 71 CATCCTCCGTCCATGTATTCAATGGATCG-AATCACCTGAAGCTCAAGGCCACGCCACCG 129
|||||||| ||||||||||||||||| | || | || || |||||||||||||||||||
Sbjct 662 TATCCTCCGGCCATGTATTCAATGGATTGAAACCGCC-GATGCTCAAGGCCACGCCACCG 720
Query 130 TCTTCGTTGCTAAGTTCTTTGGCCGTGCCGGTCTCATGT-CTTTCATCTCCGCCGTACCG 188
||||||| ||||| ||||| |||||||| |||||||||| |||| |||||||| || |||
Sbjct 721 TCTTCGTCGCTAAATTCTTCGGCCGTGCTGGTCTCATGTCCTTT-ATCTCCGCTGTTCCG 779
Query 189 GAATCTCAATGCCCTGCTTTGTTTCAGTCTTTGCTCTACGAAGCTTGTGGAAGAACTGTG 248
|| |||||| | ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 780 GATTCTCAACGTCCTGCTTTGTTTCAGTCGTTGCTCTACGAAGCTTGTGGAAGAACTGTC 839
Query 249 AATCCGGTGAACGGAGCCGTCGGATTGTTGTGGACTGGGAACTGGAATATTTGTCAAGCG 308
||||| || |||||||| ||||| |||| |||||||| ||||||||||| |||||||||
Sbjct 840 AATCCAGTTAACGGAGCAATCGGAATGTTATGGACTGGAAACTGGAATATCTGTCAAGCG 899
Query 309 GCGGTTGAGACGGTGCTTCGTGGTGGTTCTTTGAA-ACCGATACCGGAGCTTCTTA---A 364
|| ||||| || |||||||| || |||||||| || |||||| ||||||||||| | |
Sbjct 900 GCTGTTGAAACAGTGCTTCGCGGCGGTTCTTT-AAGACCGATCCCGGAGCTTCTCACTCA 958
Query 365 CGGCGGTGGATTCGCCGGGTTTCCGTCTCCTACTTCCGATGAAGCTTCTGAGATTTGTAC 424
|||||| || ||||| || ||||| || ||||| || || ||||| |||||||| || ||
Sbjct 959 CGGCGGCGGTTTCGCTGGCTTTCCTTCGCCTACATCTGAAGAAGCATCTGAGATCTGCAC 1018
Query 425 GGAAATGTTGAATCTAC-GAAAAGATGATGATTCCGGTGACCGTAATATTTACCATCACT 483
|||||||||||||| | | ||| ||||| | || || ||||| || || ||||| |
Sbjct 1019 CGAAATGTTGAATCTCCAGCAAA-ATGAT--T-CCACCGATCGTAACATCTATCATCATT 1074
Query 484 GC-CGATTCTCAAGCTCTAGATCCAGATC 511
| |||||||||||||||||||| |||||
Sbjct 1075 -CACGATTCTCAAGCTCTAGATCTAGATC 1102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36520224869
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5