BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937893
Length=869
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50560.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1395 0.0
> AT3G50560.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr3:18761088-18764016 REVERSE LENGTH=1159
Length=1159
Score = 1395 bits (755), Expect = 0.0
Identities = 827/861 (96%), Gaps = 8/861 (1%)
Strand=Plus/Plus
Query 1 GGAAAGATCATAAAGTATCGATGATGAGAAACGTAGGGAGTTCGAGCTCCAGCGGCAAAG 60
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 162 GGAAAGATCATAAAGTATCGATGATGAGAAACGTAGGGAGTTCGAGCTCTGGCAGCAAAG 221
Query 61 GCATAGCGGCGGTGGTTGGCGTTGGTCCGAAGCTTGGCCGCTCCATCGCTCGGAAGTTTG 120
|||||||||| || || ||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 222 GCATAGCGGCCGTAGTCGGCGTTGGTCCAAAGCTCGGTCGCTCCATCGCTCGGAAGTTTG 281
Query 121 CTCACGAAGGCTACACCGTCGCCATTCTCGCTCGCGATCTTGGTAGGTTATCTAGAGTAG 180
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 282 CTCACGAAGGCTACACCGTCGCCATCCTCGCTCGTGATCTTGGTAGGTTATCTAGAGTAG 341
Query 181 CAGAAGAGATAGCAAGAGAAGAGAAAGCTCAAGTGTTTGCTATAAGAATTGATTGTGCAG 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 342 CAGAAGAGATAGCAAGAGAAGAGAAAGCACAAGTGTTTGCTATAAGAATTGATTGTGCAG 401
Query 241 ATCCAAGAAGTGTAAGAGAAGCCTTCGAAGGAGTATTGTCATTAGGGTTCGTGGAGGTTT 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 402 ATCCAAGAAGTGTAAGAGAAGCCTTCGAAGGAGTATTGTCGTTAGGGTTCGTGGAGGTTT 461
Query 301 TGGTGTACAATGCTTATCATTCTTCTTCGTCTTACGCAAGTCACCATCCCACTTCTTTCA 360
| ||||||||||||||||| ||| | |||||||||||||||||||||||||||||||
Sbjct 462 TAGTGTACAATGCTTATCA---TTC-T--TCTTACGCAAGTCACCATCCCACTTCTTTCA 515
Query 361 CTCACATTCCTTTTCAATCTTTCCAAACTTCTATCTCTGTCTCTGTCTTCGCTGCATTTC 420
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 516 CCCACATTCCTTTTCAATCTTTCCAAACATCTATCTCTGTCTCTGTCTTCGCTGCATTTC 575
Query 421 TTTGCGCCCAACAGGTTATTCCCGGGATGATGGAGAAAGGAAAAGGAACTATACTCTTCA 480
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 576 TTTGCGCTCAACAGGTTACTCCCGGGATGATGGAGAAAGGAAAAGGAACTATACTCTTCA 635
Query 481 CCGGTTGCTCGGCGTCTTTGAATGGCATTGCTGGTTTCTCCGAGCTATGCTGTGGGAAAT 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 636 CCGGTTGCTCGGCGTCTTTGAATGGCATTGCTGGTTTCTCCGAACTATGCTGTGGGAAAT 695
Query 541 TTGCGTTGAGGGCACTGTCTCAATGCTTAGCAAAAGAATATCAAGCTTTTGGAATACATG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 TTGCGTTGAGGGCACTGTCTCAATGCTTAGCAAAAGAATATCAAGCTTTTGGAATACATG 755
Query 601 TGGCTCATGTTATCATCGACGGTGTGGTTGGACCTCCAAGAGAAACAAACATCCCTCCCC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 TGGCTCATGTTATCATCGACGGTGTGGTTGGACCTCCAAGAGAAACAAACATCCCTCCCC 815
Query 661 GAGGAATGGTCGTGGACCAATCATTCAACGTAGGAGGCGAAGATGGAGAAGGAGAAGGAG 720
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 GAGGAATGGTCGCAGAGCAATCATTCAACGTAGGAGGCGAAGATGGAGAAGGAGAAGGAG 875
Query 721 AAAGCTCGGGAGTGATGGGAATGGATCCTGATGTATTGGCTCAAACATATTGGTATCTCC 780
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 876 AAAGCTCGGGAGTGATGGGAATGGATCCTGATGTATTGGCTCAAACTTATTGGTATCTCC 935
Query 781 ATGTCCAAGACCGGAGAGCTTGGACCCATGAACTCGATATCCGACCATCAAACACAAGAT 840
|||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||
Sbjct 936 ATGTTCAAGACCGGAGAGCTTGGACACATGAACTCGATATCCGACCATCAAACCCAA-AT 994
Query 841 T-CTAGCTAGTACTTAAAAAA 860
| |||||||||||||||||||
Sbjct 995 TTCTAGCTAGTACTTAAAAAA 1015
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42397620068
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5