BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937931
Length=1039
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50820.1 | Symbols: PSBO2, PSBO-2, OEC33 | photosystem II su... 1670 0.0
> AT3G50820.1 | Symbols: PSBO2, PSBO-2, OEC33 | photosystem II
subunit O-2 | chr3:18890876-18892426 REVERSE LENGTH=1243
Length=1243
Score = 1670 bits (904), Expect = 0.0
Identities = 994/1039 (96%), Gaps = 0/1039 (0%)
Strand=Plus/Plus
Query 1 TTGACATCTGAGTCTTGTCGTCATGGCAACTTCTCTCCAAGCCGCCGCAACTTTTCTTCA 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 94 TTGACATCTGAGTCTTGTCATCATGGCAACTTCTCTCCAAGCCGCCGCAACTTTTCTTCA 153
Query 61 ACCGGCGAAGATAGCCGCTTCTCCTTCTCGTAATGTCCATCTCCGATCAAACCAAACCGT 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 ACCGGCGAAGATTGCCGCTTCTCCTTCTCGTAATGTCCATCTCCGATCAAACCAAACCGT 213
Query 121 GGGCAAGTCCTTTGGGTTGGACTCTTCACAAGCTAGACTCACTTGCTCCCTCCACTCTGA 180
|||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 214 GGGCAAGTCCTTTGGGTTAGACTCTTCACAAGCTAGGCTCACGTGCTCTCTCCACTCTGA 273
Query 181 CCTGAAAGACTTCGCCGGAAAATGCTCTGAAGCCGCCAAGATCGCCGGTTTCGCTCTAGC 240
||| ||||||||||| ||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 274 CCTCAAAGACTTCGCTGGAAAATGCTCCGACGCCGCCAAGATCGCCGGTTTTGCTCTAGC 333
Query 241 CACCTCTGCTCTTGTTGTCTCGGGGGCTAGTGCAGAAGGAGCGCCAAAGAGGCTAACGTA 300
|||||||||||| |||||||||||||| |||| || ||||| |||||||||||||||||
Sbjct 334 CACCTCTGCTCTCGTTGTCTCGGGGGCCGGTGCGGAGGGAGCACCAAAGAGGCTAACGTA 393
Query 301 CGACGAGATACAGAGCAAGACTTACATGGAGGTTAAGGGGACTGGTACGGCGAACCAGTG 360
||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||
Sbjct 394 CGACGAGATACAGAGCAAGACTTACATGGAGGTAAAGGGTACCGGTACGGCAAACCAGTG 453
Query 361 TCCGACTATCGACGGTGGCTCTGAGACATTCTCGTTCAAACCTGGTAAGTACACTGGCAA 420
||| |||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 454 TCCAACTATCGATGGTGGCTCTGAGACATTCTCGTTCAAAGCTGGTAAGTACACAGGCAA 513
Query 421 GAAGTTCTGCTTTGAGCCCACTTCCTTCACCGTCAAGGCAGATAGCGTCAGCAAGAATGC 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 GAAGTTCTGCTTCGAGCCCACTTCCTTCACCGTCAAGGCAGATAGCGTCAGCAAGAATGC 573
Query 481 ACCGCCGGATTTCCAAAACACTAAGCTCATGACCCGTCTTACTTACACGCTTGATGAGAT 540
||||||||||||||||||||| ||||||||||||||||| |||||||| || ||||||||
Sbjct 574 ACCGCCGGATTTCCAAAACACCAAGCTCATGACCCGTCTCACTTACACACTCGATGAGAT 633
Query 541 CGAAGGACCCTTCGAGGTTGGTTCAGACGGAAGCGTGAAGTTCAAGGAAGAAGATGGGAT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 634 CGAAGGACCCTTCGAGGTTGGTTCAGACGGAAGCGTGAAGTTCAAGGAAGAAGATGGTAT 693
Query 601 AGATTACGCAGCAGTCACAGTCCAGCTTCCGGGAGGAGAACGCGTGCCGTTCCTCTTCAC 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 CGATTACGCAGCAGTCACAGTCCAGCTTCCGGGAGGAGAACGCGTGCCGTTCCTCTTCAC 753
Query 661 GGTTAAGCAGCTCGAGGCTTCAGGGAAACCCGAAAACTTCAGTGGCAAGTTCTTAGTTCC 720
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 754 GGTTAAGCAGCTCGAGGCTTCAGGGAAACCCGAAAGCTTCAGTGGCAAGTTCTTAGTTCC 813
Query 721 ATCGTACCGTGGCTCGTCCTTCTTGGACCCAAAGGGTCGTGGTGGATCCACTGGGTACGA 780
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 814 ATCGTACCGTGGCTCGTCCTTTTTGGACCCAAAGGGTCGTGGTGGATCCACTGGGTACGA 873
Query 781 TAATGCAGTGGCTTTGCCTGCCGGAGGCAGAGGAGACGAGGAAGAGCTGTCGAAGGAAAA 840
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 874 TAATGCAGTGGCTTTGCCTGCCGGAGGCAGAGGAGACGAGGAAGAGCTATCCAAGGAAAA 933
Query 841 CGTCAAGAACACGGCGGCTTCTGTCGGAGAGATCACTTTGAAGATCACAAAGAGCAAACC 900
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 934 CGTCAAGAACACGGCGGCTTCCGTCGGAGAGATCACTTTGAAGATCACAAAGAGCAAACC 993
Query 901 GGAGACAGGTGAAGTGATCGGAGTTTTCGAGAGCCTTCAGCCATCGGATACTGACTTGGG 960
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 994 GGAGACAGGTGAAGTGATCGGAGTGTTCGAGAGTCTTCAGCCATCGGATACTGACTTGGG 1053
Query 961 TGCGAAGGTACCTAAAGATGTGAAGATCCAAGGGGTTTGGTACGGTCAGATTGAGTAATT 1020
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1054 TGCTAAGGTACCAAAAGATGTGAAGATCCAAGGGGTTTGGTACGGTCAGATTGAGTGATT 1113
Query 1021 TTTATAATTTGTAACTTTT 1039
|||||||||| ||||||
Sbjct 1114 CATATAATTTGTTACTTTT 1132
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50937425058
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5