BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938013
Length=595
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51510.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 929 0.0
> AT3G51510.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast thylakoid membrane, chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth
stages; Has 42 Blast hits to 42 proteins in 19 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
40; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
| chr3:19109062-19110051 FORWARD LENGTH=811
Length=811
Score = 929 bits (503), Expect = 0.0
Identities = 566/596 (95%), Gaps = 5/596 (1%)
Strand=Plus/Plus
Query 1 TGCTTTCATCTTCTTCTTAAGCATCTATGGCCGCGTCTCTAACATCTCTTCCGACCGGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 31 TGCTTTCATCTTCTTCTTAAGCATCTATGGCCGCGTCTCTAACATCTCTTCCGACCGGTT 90
Query 61 TCTGTCTGAGCCATGGTGATGAGTGTTGTAACAGCCGTTCACCTACCAAATCACCATTTC 120
| ||||| |||||||||||||| ||||| ||| | ||||||||||||||||||||||||
Sbjct 91 TTTGTCTTAGCCATGGTGATGAATGTTGCAAC--C-GTTCACCTACCAAATCACCATTTC 147
Query 121 CAGGCCACCATCCTCTGGCTGGGAGGAGGAAGGTTCACTTGCTGCATTACGAACGTAGTA 180
||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 148 CAGGCCATCATCCTCTGGCTGGGAGGAGGAAGGGTCACTTGCTCCATTACGAACGTAGTA 207
Query 181 CAGTGAGGAGATTGGTCGTGACGGCGGCGACGGAGGGTTCTAGAAAATCTAAAGAAAGTG 240
|||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||
Sbjct 208 CAGTGAGGAGATTGGTTGTGACGGCGGCGACGGAGGGATCTAAAAAATCTAAAGAAAGTG 267
Query 241 AACCGTCTTGGGCGAACCCTGACTCAGATGAGCCACCTCCTTGGGCTAGAAATGAAGGTC 300
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 268 AACCGTCTTGGGCGAATCCTGACTCAGATGAGCCACCTCCTTGGGCTAGAAACGAAGGTC 327
Query 301 GTTCTTCTACGTCCCAAGAGAGCTTTGAGGTTCCCTTCTATGTTTATCTGCTAGCCTCTG 360
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||| || |
Sbjct 328 GTTCTTCTACGTCCCAAGAGAGCTTTGAGGTTCCTTTCTTTGTTTATCTGCTAGCTTCCG 387
Query 361 CGATTACTGCCATTGCTGCTATTGGTTCTGTTTTCGAGTACTCAAGCAAGAATCCAGTTT 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 388 CGATTACTGCCATTGCTGCTATTGGTTCTGTTTTCGAGTACACAAGCAAGAATCCAGTTT 447
Query 421 TCGGGGTCTTGGATTCTGACAGCATCTTTTATACTCCTGTGCTTGGATTCTTTGCTCTTA 480
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 TCGGGATCTTGGAATCTGACAGCATCTTTTATACTCCTGTGCTTGGATTCTTTGCTCTTA 507
Query 481 CTGGAATCCCTACTTCTGTATTTCTATGGTTCAAATCCGTTGAAGCTGCTAATAAGGAAG 540
|||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 508 CTGGAATCCCCACTTCTGTGTTCCTATGGTTCAAATCCGTTGAAGCTGCTAATAAGGAAG 567
Query 541 CTCAGGAACAAGATAAAAGAGATGGCTTTCTTTAAAACTCATTT-GTGTGTTTCTG 595
|||| |||||||||||||||||||||||||||||||| || ||| ||||| |||||
Sbjct 568 CTCAAGAACAAGATAAAAGAGATGGCTTTCTTTAAAA-TCCTTTTGTGTGATTCTG 622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28633463790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5