BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938046
Length=1208
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51820.1 | Symbols: ATG4, G4, CHLG | UbiA prenyltransferase ... 1965 0.0
> AT3G51820.1 | Symbols: ATG4, G4, CHLG | UbiA prenyltransferase
family protein | chr3:19216003-19219057 REVERSE LENGTH=1585
Length=1585
Score = 1965 bits (1064), Expect = 0.0
Identities = 1160/1208 (96%), Gaps = 0/1208 (0%)
Strand=Plus/Plus
Query 1 TTCTCTCCTCCGTCGTTTCTATGACTTCGATTCTCAACACCGTCTCCTCCATCCATTCCT 60
||||||| ||||||| |||||||||||||||||||||||| |||||| ||||||| || |
Sbjct 104 TTCTCTCTTCCGTCGGTTCTATGACTTCGATTCTCAACACTGTCTCCACCATCCACTCTT 163
Query 61 CCAGAGTTACCTCCGTCGACCGAGTCGGATTTCTCTCTCTCCGGAATCCGGATTCCGTCG 120
||||||||||||||||||| ||||||||| | |||||||| |||||| |||||||||| |
Sbjct 164 CCAGAGTTACCTCCGTCGATCGAGTCGGAGTCCTCTCTCTTCGGAATTCGGATTCCGTTG 223
Query 121 AGTTCACTCGCCGACGTTCTGGTTTCTCGACGTTGATCTTCGAATCACCCGGGCGGAGAT 180
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 224 AGTTCACTCGCCGGCGTTCTGGTTTCTCGACGTTGATCTACGAATCACCCGGGCGGAGAT 283
Query 181 TTGTTGTGCGTGCGGCGGAGACTGATACTGATAAAGTTAAATCCCAGGCACCGGACAAGG 240
||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||
Sbjct 284 TTGTTGTGCGTGCGGCGGAGACTGATACTGATAAAGTTAAATCTCAGACACCTGACAAGG 343
Query 241 CACCAGCCGGTGGTTCAAGCATTAACCAGCTTCTCGGTATCAAAGGAGCATCTCAAGAAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 CACCAGCCGGTGGTTCAAGCATTAACCAGCTTCTCGGTATCAAAGGAGCATCTCAAGAAA 403
Query 301 CTAATAAATGGAAGATTCGTCTTCAGCTTACAAAGCCAGTCACCTGGCCTCCATTGGTTT 360
|||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||
Sbjct 404 CTAATAAATGGAAGATTCGTCTTCAGCTTACAAAACCAGTCACTTGGCCTCCACTGGTTT 463
Query 361 GGGGAGTCGTCTGTGGTGCTGCTGCTTCAGGGAACTTTCATTGGACCCCAGAGGATGTTG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 GGGGAGTCGTCTGTGGTGCTGCTGCTTCAGGGAACTTTCATTGGACCCCAGAGGATGTTG 523
Query 421 CTAAGTCGATTCTTTGCATGATGATGTCTGGCCCATGTCTTACTGGCTATACACAGACAA 480
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 524 CTAAGTCGATTCTTTGCATGATGATGTCTGGTCCTTGTCTTACTGGCTATACACAGACAA 583
Query 481 TCAACGACTGGTATGATCGAGATATTGACGCAATTAATGAGCCGTATCGACCAATTCCAT 540
||||||||||||||||| ||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 584 TCAACGACTGGTATGATAGAGATATCGACGCAATTAATGAGCCATATCGTCCAATTCCAT 643
Query 541 CTGGAGCAATATCAGAGCAAGAGGTTATTACACAAGTCTGGGTGCTGTTATTGGGAGGTC 600
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 644 CTGGAGCAATATCAGAGCCAGAGGTTATTACACAAGTCTGGGTGCTATTATTGGGAGGTC 703
Query 601 TTGGAATTGCTGGAATATTAGATGTGTGGGCAGGGCATACCACGCCCACTGTGTTCTATC 660
|||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 704 TTGGTATTGCTGGAATATTAGATGTGTGGGCAGGGCATACCACTCCCACTGTCTTCTATC 763
Query 661 TTGCTCTGGGAGGATCATTGCTATCTTATATATACTCTGCTCCACCTCTTAAGCTAAAAC 720
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 TTGCTTTGGGAGGATCATTGCTATCTTATATATACTCTGCTCCACCTCTTAAGCTAAAAC 823
Query 721 AAAATGGATGGGTTGGGAATTTTGCACTTGGAGCAAGCTACATCAGTTTGCCATGGTGGG 780
|||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 824 AAAATGGATGGGTTGGAAATTTTGCACTTGGAGCAAGCTATATTAGTTTGCCATGGTGGG 883
Query 781 CTGGCCAAGCATTGTTTGGCACTCTTACACCAGACGTTGTTGTTCTAACACTTTTGTACA 840
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 884 CTGGCCAAGCATTGTTTGGCACTCTTACGCCAGATGTTGTTGTTCTAACACTCTTGTACA 943
Query 841 GCATAGCTGGGTTAGGAATAGCCATTGTTAATGACTTCAAAAGTGTTGAAGGAGACAGAG 900
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 944 GCATAGCTGGGTTAGGAATAGCCATTGTTAACGACTTCAAAAGTGTTGAAGGAGATAGAG 1003
Query 901 CATTAGGACTTCAGTCTCTCCCAGTAGCTTTTGGCACTGAAACTGCAAAATGGATATGCG 960
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1004 CATTAGGACTTCAGTCTCTCCCAGTAGCTTTTGGCACCGAAACTGCAAAATGGATATGCG 1063
Query 961 TTGGTGCTATAGACGTTACTCAGCTCTCTGTTGCTGGATATCTATTAGCATCTGGCAAAC 1020
|||||||||||||| |||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 1064 TTGGTGCTATAGACATTACTCAGCTTTCTGTTGCCGGATATCTATTAGCATCTGGGAAAC 1123
Query 1021 CTTATTATGCGTTGGCGTTGGTTGCTTTGATCATTCCTCAGATTGTGTTCCAGTTTAAAT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 CTTATTATGCGTTGGCGTTGGTTGCTTTGATCATTCCTCAGATTGTGTTCCAGTTTAAAT 1183
Query 1081 ACTTTCTCAAGGACCCTGTCAAATACGACGTCAAGTACCAGGCAAGCGCGCAGCCATTCT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 ACTTTCTCAAGGACCCTGTCAAATACGACGTCAAGTACCAGGCAAGCGCGCAGCCATTCT 1243
Query 1141 TGGTGCTCGGCATATTTGTAACGGCATTAGCATCGCAACACTGAAAAAGGCGTATGTTGA 1200
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1244 TGGTGCTCGGAATATTTGTAACGGCATTAGCATCGCAACACTGAAAAAGGCGTATTTTGA 1303
Query 1201 TGGAGTTT 1208
||| ||||
Sbjct 1304 TGGGGTTT 1311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59337044190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5