BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg938099 Length=478 Score E Sequences producing significant alignments: (Bits) Value AT3G52230.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 673 0.0 > AT3G52230.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast outer membrane, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19371213-19372687 FORWARD LENGTH=840 Length=840 Score = 673 bits (364), Expect = 0.0 Identities = 447/485 (92%), Gaps = 14/485 (3%) Strand=Plus/Plus Query 1 TCCGTCTCGGTGTATCAACAATGGCTGAAGAAGCTC-A--AGATCGTGCTAATGGCTCTG 57 |||||||||||| | || ||||||||||||||||| | ||||||| |||||||||||| Sbjct 93 TCCGTCTCGGTGGAGGAAAAATGGCTGAAGAAGCTCAAGTAGATCGTTCTAATGGCTCTG 152 Query 58 A-T--TCATCTCCTCCCATAAAGTTACCTCCTTTCATCTCCAACCTATTCGCCTTTCTTC 114 | | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 153 ATTCATCATCTCCTCCCATAAAGTTACCTCCTTTCATCACCAACCTATTCGCCTTTCTTC 212 Query 115 AACCTAAGCCTCCTCCTGCTACTATTGATGCCAATGCTCCTAAACCCACCGGCGAGAAGG 174 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 213 AACCTAAGCCTCCTCCTGCTACTATTGATGCCAATGCTCCTAAACCTACCGGCGAGAAGG 272 Query 175 AACCTCAGAAGTCGACTTACGAGACTGTCTCTTTCCCTTACAATCCACCCAAAACCGCAG 234 |||||| ||| ||||| |||||||||||| |||||||||||||||||||||||| ||||| Sbjct 273 AACCTCTGAAATCGACCTACGAGACTGTCACTTTCCCTTACAATCCACCCAAAAGCGCAG 332 Query 235 AGCCAATCAAGTTTGAGGCTGAGCCCAGCTCTGGCAGGACTTCTAACTCCGTCATCCTTT 294 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 333 AGCCAATCAAGTTTGAGGCTGAGCCCAGCTCTGGCAGGACTTCCAACTCTGTCATCCTTT 392 Query 295 GGCAGGTATATGCACTTGGAGGGTTTCTTGTCCTGAAGTGGGCCTGGGCAAGATGGAATG 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 393 GGCAGGTATATGCACTTGGAGGGTTTCTTGTCCTGAAGTGGGCCTGGGCAAGATGGAATG 452 Query 355 AAAGGAACGAGAGAAGTGACAAAAATGAGGCGACGGGTGATGATGACCA-ACCTTCTAAT 413 ||||||||||||||||||||||||| |||||||||||||||||||| || | | | Sbjct 453 AAAGGAACGAGAGAAGTGACAAAAAGGAGGCGACGGGTGATGATGATCAGAAAG---A-T 508 Query 414 CAGAAAGATGATGATGATCAATCTTCTGATGGGCATGAAGACTAGTCATATTGCATGAAC 473 || ||||| ||||||||||| |||||||||||||||||||||||||||| | ||||| Sbjct 509 --GAT-GATGAGGATGATCAATCATCTGATGGGCATGAAGACTAGTCATATTACTTGAAC 565 Query 474 ACGAT 478 ||||| Sbjct 566 ACGAT 570 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22756068591 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5