BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg938119 Length=1035 Score E Sequences producing significant alignments: (Bits) Value AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding p... 1476 0.0 > AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding protein 33 | chr3:19421397-19423097 FORWARD LENGTH=1454 Length=1454 Score = 1476 bits (799), Expect = 0.0 Identities = 961/1038 (93%), Gaps = 16/1038 (2%) Strand=Plus/Plus Query 4 CACAAACC-CGTTTTGTAAAATGTCGTCAGCATCTTGTTCCTCTGCCGTGGCGGTATCCG 62 |||||||| | ||| | |||||||||||||| | ||||||||| |||||||| ||||||| Sbjct 204 CACAAACCTC-TTTAGAAAAATGTCGTCAGCTTATTGTTCCTCCGCCGTGGCTGTATCCG 262 Query 63 CCGCAGCCACCGCTTCCTCCGCCGCTACCTTTAGTCCATTACTCTTTTCCCACTCCAACT 122 ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | Sbjct 263 CCGCAGCCACCGCTTCCTCCGCCGCTACCTTTAATCCATTACTCTCCTCCCACTCCAA-T 321 Query 123 T-CCGGCTCTTCTATCGCTTCACACCAAAATCCTTCAAACTCGTTGCCAATTGCCCTAAT 181 | || |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 322 TCCCAACTCTTCTATCGCTTTACACCAAAATCCTTCAAACTCGTTGCCAATTGCCCTAAT 381 Query 182 CCACTTATCCTCCATTCAAATATCCGTCGCCACCGCTTCTTCTGCGCCGCCGAAACCGAA 241 ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 382 CCACTAATCCTCCACTCAAATATCCGCCGCCACCGCTTCTTCTGCGCCGCCGAAACCGAA 441 Query 242 GCTACTTCTGCCGATGAAGAAATCCAGGCATCACTagaagaagaagaagaagtagaagaa 301 |||| ||| |||||||| ||||||||||||||| |||||||||||||||| ||||||||| Sbjct 442 GCTAGTTCCGCCGATGATGAAATCCAGGCATCAGTAGAAGAAGAAGAAGAGGTAGAAGAA 501 Query 302 gaagaagaagaagaagtagaggaagaag-aCGCA-GATGAAAAACAGACTACACAAGCGA 359 |||| ||| |||| || || ||||||| | | | || ||||||||||| || ||||||| Sbjct 502 GAAGGAGATGAAG--GT-GAAGAAGAAGTA-G-AGGAAGAAAAACAGACGACGCAAGCGA 556 Query 360 GTGGTGAAGAAGGGAGGCTTTACGTTGGGAATTTACCTTACACAATCACTTCTTCTGAGC 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 557 GTGGTGAAGAAGGGAGGCTTTACGTTGGGAATTTACCTTACACAATCACTTCTTCTGAGC 616 Query 420 TCTCTCAGCTTTTTGGAGAAGCTGGCAA-TGTCGTCGATGTTCAGATTGTTTATGATAAA 478 |||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 617 TCTCTCAGATTTTTGGAGAAGCTGG-AACTGTCGTCGATGTTCAGATTGTTTATGATAAA 675 Query 479 GTCACTGATAGAAGCAGAGGATTTGGATTTGTAACCATGGGAACCATCGAAGAAGCTAAG 538 || |||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| Sbjct 676 GTTACTGATAGAAGCAGAGGATTTGGATTTGTAACAATGGGAAGCATTGAAGAAGCTAAA 735 Query 539 GAAGCGATTCAGATGTTTAACAGCTCTCAAATTGGTGGTAGAACTGTGAAAGTGAACTTC 598 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 736 GAAGCGATGCAGATGTTTAACAGCTCTCAAATTGGTGGTAGAACGGTGAAAGTGAACTTC 795 Query 599 CCGGAGGTGCCGAGAGGCGGAGAGAGA-GAAGTAATGAGAACCAAAATCCGTGATACTAA 657 |||||||||||||||||||| |||| | |||||||||||||||||||||||||||| ||| Sbjct 796 CCGGAGGTGCCGAGAGGCGGTGAGA-ACGAAGTAATGAGAACCAAAATCCGTGATAATAA 854 Query 658 CCGAAGTTATGTCGATAGTCCTCATAAGATTTATGCAGGAAACCTTGGTTGGAATCTAAC 717 ||| |||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 855 CCGGAGTTATGTTGATAGTCCTCATAAGGTATATGCAGGAAACCTTGGTTGGAATCTAAC 914 Query 718 TTCCCAAGGTTTAAAAGATGCATTTGGTGATCAACCTGGTGTGCTTGGTGCTAAAGTTAT 777 || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 915 CTCACAAGGTTTAAAGGATGCATTTGGTGATCAACCTGGTGTGCTTGGTGCTAAAGTTAT 974 Query 778 CTATGAAAGAAACACTGGGAGGTCTCGGGGATTTGGTTTCATCTCGTTCGAGTCAGCGGA 837 |||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 975 CTATGAAAGAAATACTGGGAGGTCTAGGGGGTTTGGTTTCATCTCGTTCGAGTCAGCGGA 1034 Query 838 AGATGTTCAGTCTGCTTTGGCTACCATGAATGGCGTGGAAGTTGAAGGACGAGCGCTGAG 897 | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1035 AAATGTTCAGTCTGCTTTGGCTACAATGAATGGCGTGGAAGTTGAAGGACGAGCGCTGAG 1094 Query 898 GCTAAATTTGGCTTCAGAGAGAGAGAAAGCCACCGTATCTCCTCCATCTGTAGAAGAAGG 957 |||||||||||||||||||||||||||| |||| || |||||||| || ||||||||||| Sbjct 1095 GCTAAATTTGGCTTCAGAGAGAGAGAAACCCACTGTGTCTCCTCCTTCCGTAGAAGAAGG 1154 Query 958 AGAAACCAAAGAGGCCAGTCTAGAGAGTAGTGAGGTGCTTTCGAACGTTAGTACATGAAG 1017 ||||||| | ||||||||||||||||||| |||||||||||||| |||||| ||||||| Sbjct 1155 AGAAACCGAGGAGGCCAGTCTAGAGAGTAACGAGGTGCTTTCGAATGTTAGTGCATGAAG 1214 Query 1018 AAAGCAATAGCACAATAG 1035 | |||| |||||||||| Sbjct 1215 CA-GCAAAAGCACAATAG 1231 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50736488470 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5