BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938138
Length=856
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52510.1 | Symbols: | F-box associated ubiquitination effec... 195 8e-49
> AT3G52510.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:19469652-19470378 REVERSE LENGTH=651
Length=651
Score = 195 bits (105), Expect = 8e-49
Identities = 171/202 (85%), Gaps = 7/202 (3%)
Strand=Plus/Plus
Query 661 AGATCAGAACATCAGGTTTTGGTACTTGGTCCTGGAGCTTCTTGGAGAAGCACCCAAAGC 720
||||| || ||||| || |||||||||||||||||||||| ||||||||| || | |||
Sbjct 121 AGATCCGAGCATCAAGTGTTGGTACTTGGTCCTGGAGCTTATTGGAGAAGTACTTATAGC 180
Query 721 CGCACTCCTCCTCCTGCTCATCATCCTTTCTCACAAGGTATCTCCATCAACGGTATGTTG 780
| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 AACGCTCCTCCTCCTCCTCATCGTCCTTTCTCACAAGGTATCTCCATCAACGGTATGTTG 240
Query 781 TATTATGGAGC--CT-GGCTTGAAGCCAACAAATGT-TGGCTCATGAGTTTGGACT-GAC 835
|| |||||||| || || |||| || || |||||| || ||| ||||||| |||| |||
Sbjct 241 TACTATGGAGCAGCTTGGGTTGATGCAAATAAATGTGTG-CTCGTGAGTTTTGACTTGAC 299
Query 836 TTCTGAAGGAGTCAATT-GATT 856
|| ||||| | |||||| ||||
Sbjct 300 TTTTGAAGAATTCAATTTGATT 321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41744576157
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5