BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938241
Length=952
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53410.1 | Symbols: | RING/U-box superfamily protein | chr3... 1306 0.0
AT3G53403.1 | Symbols: | Pseudogene of AT3G53410; zinc finger ... 233 2e-60
> AT3G53410.1 | Symbols: | RING/U-box superfamily protein | chr3:19800951-19802328
REVERSE LENGTH=1178
Length=1178
Score = 1306 bits (707), Expect = 0.0
Identities = 876/956 (92%), Gaps = 17/956 (2%)
Strand=Plus/Plus
Query 1 CAATTTCGCAAAGGTGGATCATGGGCAATTTCATAAGCGGTGGTAGCCGCCCCCAATATC 60
||||||||||||| ||||||||||||||| ||||||||||||| |||||||| || |||
Sbjct 35 CAATTTCGCAAAGTTGGATCATGGGCAATGTCATAAGCGGTGGAAGCCGCCCGGAAAATC 94
Query 61 ACCGAGACCATCA-ATCGCCGCCGCCTCCAAACCCTAATCCTCAGTTCGAAGGCAATTAT 119
| || |||| | | ||||||||| ||||||||||||| |||||| | |||||||||||
Sbjct 95 ATCGGGACCGT-ACTTCGCCGCCGTATCCAAACCCTAATGCTCAGTACCAAGGCAATTAT 153
Query 120 CCTTTGCCGTACCACCACCAACAAGATTGTGCTAGGTATCCTTATGGGGAGATGGCGTCT 179
|| | ||||| | | |||||||||||||||||||| ||||| ||||||||||||
Sbjct 154 CCGTCGCCGT------A-C--CAAGATTGTGCTAGGTATCCGTATGGAGAGATGGCGTCT 204
Query 180 CCGGTGCAATACGTAGAGCACCAGGAAGCAGTGACTATAAGGAACGACATCAATTTGAAG 239
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 205 CCAGTGCAATACGTAGAGCATCAGGAAGCAGTGACTATAAGGAACGACATCAATCTGAAG 264
Query 240 AAAGAAACCTTGAGATTTGAGCCTGATGAACAAAACCCTGGCAAGTTTTTGCTCTCCTTC 299
|||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 265 AAAGAAACTTTGAGACTTGAGCCTGATGAACAGAACCCTGGCAAGTTTTTGCTCTCCTTC 324
Query 300 ACTTTTAACGCCTCTGTTCCTGGAAGCATCTCTGTGATGTTCTTTGCTAAAGAAGGCAAA 359
|||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 325 ACTTTTGACGCCTCTGTTCCTGGAAGCATCACTGTAATGTTCTTTGCTAAAGAAGGCAAA 384
Query 360 GAGTGTAACTTTAATGCGACAAAGGAGGATCTGTTTCCATCCACGAC-TGTTAGTTTTGC 418
|| |||||| ||| |||||||||||||||||| ||||||||||| | |||||||||||
Sbjct 385 GACTGTAACCTTATTGCGACAAAGGAGGATCTTTTTCCATCCAC-TCAAGTTAGTTTTGC 443
Query 419 AAAAGGTATGGAACAGAGATTCAAGCAGGCTTGTGGAACAGGGATTGATTTCTCAGCTTT 478
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| | |
Sbjct 444 AAAAGGTCTGGAACAGAGATTCAAGCAGGCTTGTGGGACAGGGATTGATTTCTCAGATAT 503
Query 479 GTCAG-GGACAGATTTGGTTGAGGCAAGCGAGACAGATGTTTATCATGTGGCAGTGATAG 537
||||| || |||||||||||||||||| |||||||||||| |||||||||||||||| ||
Sbjct 504 GTCAGAGG-CAGATTTGGTTGAGGCAAACGAGACAGATGTGTATCATGTGGCAGTGAAAG 562
Query 538 CAGAGGTAGTATCAGAAGATGATCATTCTGAGTCTGAGACACTAAACAGACAGATAACTC 597
|||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||
Sbjct 563 CAGAGGTAGTATCAGAAGATGATCATCCTGAGTCTGGGACACCAAACAGACAGATAACTC 622
Query 598 ATGTGGTTTTAGAGAAAGATCATAAGGGTGAATACAAGGCGAGAGTGGTCAAGCAGATCC 657
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 623 ATGTGGTTTTAGAGAAAGATCATAAGGGTGAGTACAAGGCGAGAGTGGTGAAGCAGATCC 682
Query 658 TGTGGGTGAATGGGAAAAGGTATGTTCTTCAAGAGATTTATGGGATTGGTAGTACAGTTG 717
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 683 TGTGGGTGAATGGGAATAGGTATGTTCTTCAAGAGATTTATGGGATTGGTAATACAGTTG 742
Query 718 ATGATAATGGAGAAGATGCGAACGAGAGAGGAAAAGAATGTGTCATCTGCTTATCGGAGC 777
|||||||||||||||||||||| || |||||||||||||| |||||||||||||| ||||
Sbjct 743 ATGATAATGGAGAAGATGCGAATGAAAGAGGAAAAGAATGCGTCATCTGCTTATCTGAGC 802
Query 778 CACGAGACACTACTGTTCTCCCATGCAGGCACATGTGTATGTGTAGCGGTTGTGCAAAGC 837
|||| || || ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 803 CACGGGATACCACTGTTCTCCCTTGCAGGCACATGTGTATGTGTAGCGGTTGTGCAAAGC 862
Query 838 TTTTGAGGTTTCAGACAAACCTCTGTCCCATCTGTAGACAACCGGTGGATAGGCTTTTGG 897
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 863 TTTTGAGGTTTCAGACAAACCTCTGCCCCATCTGTAGACAACCGGTGGATAGGCTTTTGG 922
Query 898 AGATAACAGTCAACA-CTGATGACAGGAACCAGTGAGCTTTGCTACGTTGCTCTTC 952
|||||||||| |||| | | ||||||||| ||||||| |||||||||| ||||||
Sbjct 923 AGATAACAGTGAACAACA-ACGACAGGAACTAGTGAGCCTTGCTACGTTACTCTTC 977
> AT3G53403.1 | Symbols: | Pseudogene of AT3G53410; zinc finger
(C3HC4-type RING finger) family protein | chr3:19800361-19800695
REVERSE LENGTH=335
Length=335
Score = 233 bits (126), Expect = 2e-60
Identities = 271/336 (81%), Gaps = 30/336 (9%)
Strand=Plus/Plus
Query 363 TGTAACTTTAATGCGACAAAGGAGGATCTGTTT--CCATCCA--CGACTGTTAGTTTTGC 418
||| |||||| || ||||||||||||||||||| ||||||| | || |||||||| |
Sbjct 10 TGTGACTTTATTGTGACAAAGGAGGATCTGTTTCCCCATCCACTCAAC--TTAGTTTTCC 67
Query 419 AAAAGGTAT-GGAACAGAGATTCAAGCAGGCTTGTGGAACAGGGA-TTGATTTCTCAGCT 476
||||||| | || | ||||||||||||||||||||||||| | | |||||||||| ||
Sbjct 68 AAAAGGT-TGGGCAGAGAGATTCAAGCAGGCTTGTGGAAC-TGAATTTGATTTCTCCTCT 125
Query 477 TTGTCAG-GGACAGATTTGGTTGAGGCAAGCGAGACAGATGTTTATCATGTGGCAGTGAT 535
| |||| || |||||||||| |||| ||| |||||| |||| |||| |||||||||||
Sbjct 126 CTATCAGAGG-CAGATTTGGTCGAGGTAAGTGAGACACATGTGTATCCTGTGGCAGTGAA 184
Query 536 AGCAGA-G----GT-AGTATCAGAAGATGAT-CATTCTGAGTCTGAGACACTAAA-CAGA 587
| |||| | | || ||||||||||||| ||| | ||||||| |||| ||| ||
Sbjct 185 AACAGATGCATCATCAG-ATCAGAAGATGATCCATCCACAGTCTGA-ACACCAAACCA-T 241
Query 588 CAGATAACTCATGTGGTTTTAGAGAAAGATCATAAGGGTG---A-ATACAAGGCGAGAGT 643
|||||||||||| |||||||||||||||||||||||| | ||||||||| ||||
Sbjct 242 CAGATAACTCAT-ACTTTTTAGAGAAAGATCATAAGGGTGAATACATACAAGGC--GAGT 298
Query 644 GGTCAAGCAGATCCTGTGGGTGAATGGGAAAAGGTA 679
|| ||| || ||||||||||||||||||| |||||
Sbjct 299 CGTGAAGTAGGTCCTGTGGGTGAATGGGAATAGGTA 334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46567054269
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5