BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938310

Length=556
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G53990.1 | Symbols:  | Adenine nucleotide alpha hydrolases-l...   872    0.0  


> AT3G53990.1 | Symbols:  | Adenine nucleotide alpha hydrolases-like 
superfamily protein | chr3:19989337-19991134 REVERSE LENGTH=919
Length=919

 Score =  872 bits (472),  Expect = 0.0
 Identities = 508/525 (97%), Gaps = 3/525 (1%)
 Strand=Plus/Plus

Query  1    AACCATCTCAAAGTTTCTTGAGAAGAAGAAAAAGGGTCAAGAAAGATGCCTAAAGACAGG  60
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  72   AACCATCTCAAAGTTTCTTGAGAAGAA-AAAAAGGGTCAAGAAAGATGCCTAAAGACAGG  130

Query  61   AAGATCGGAATCGCCATGGACTTCTCTGATAGCAGCAAGAACGCTTTGCAATGGGCCATC  120
            || ||||||||||||||||| ||||| || ||||||||||||||| || ||||||| |||
Sbjct  131  AATATCGGAATCGCCATGGATTTCTCAGAGAGCAGCAAGAACGCTCTGAAATGGGCGATC  190

Query  121  GAGAACTTAGCGGATAAAGGAGACAC-ACTTTACATCATCCACACTCTACCACTCTCTGA  179
            ||||||||||| || ||||||||||| | |||||||||||||||||||||||||||||| 
Sbjct  191  GAGAACTTAGCAGACAAAGGAGACACGA-TTTACATCATCCACACTCTACCACTCTCTGG  249

Query  180  CGATGAATCTCGTAACTCTCTCTGGTTCAAATCCGGTTCTCCTCTCATACCGTTGGCAGA  239
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  250  CGATGAATCTCGTAACTCCCTCTGGTTCAAATCCGGTTCTCCTCTCATACCGTTGGCAGA  309

Query  240  GTTTAGGGAACCGGAGATTATGGACAAATACGGTGTCAAAATCGACATCGCATGTCTTGA  299
            |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct  310  GTTTAGGGAACCGGAGATTATGGAGAAATACGGTGTCAAAACCGACATCGCATGTCTTGA  369

Query  300  TATGCTCGACACTGGCTCGAGGCAGAAAGAGGTGCATGTAGTGACCAAGTTATACTGGGG  359
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  370  TATGCTCGACACTGGTTCGAGGCAGAAAGAGGTGCATGTAGTGACCAAGTTATACTGGGG  429

Query  360  AGATGCAAGAGAGAAGCTTGTTGATGCTGTTAAAGATCTTAAACTCGATTCTATTGTCAT  419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  430  AGATGCAAGAGAGAAGCTTGTTGATGCTGTTAAAGATCTTAAACTCGATTCTATTGTCAT  489

Query  420  GGGAAGCAGAGGACTCAGTGCTCTTCAAAGGATAATAATGGGAAGCGTGAGCAGCTTTGT  479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  490  GGGAAGCAGAGGACTCAGTGCTCTTCAAAGGATAATAATGGGAAGCGTGAGCAGCTTTGT  549

Query  480  GATCCAACACGCGCCTTGCCCTGTCACCGTTGTCAAGGATAACGA  524
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  550  GATCCAACACGCGCCTTGCCCTGTCACCGTTGTCAAGGATAACGA  594



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26674332057


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5