BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938338
Length=1451
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54190.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2420 0.0
AT2G38630.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1495 0.0
> AT3G54190.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:20061528-20064154 REVERSE LENGTH=1909
Length=1909
Score = 2420 bits (1310), Expect = 0.0
Identities = 1402/1447 (97%), Gaps = 3/1447 (0%)
Strand=Plus/Plus
Query 6 AAGAAGGAAGAAGTAGATGGAAGGAAGAAGGATTACGGCAAGCCCTAGACCTTGTAGTGG 65
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 AAGAAGGAAGAATTAGATGGAAGGAAGAAGGATTACGGCAAGCCCTAGACCTTGTAGTGG 318
Query 66 AAGAAGAGTTGTGGCTaaaaaaaGGTCTCGACCCGATGGATTCGTCAACAGTGTTAAAAA 125
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 319 AAGAAGAATTGTGGCTAAGAAAAGGTCTCGACCCGATGGATTCGTCAACAGTGTTAAAAA 378
Query 126 GCTTCAACGGAGAGAAATCTCATCTCGTAAAGATCGAGCTTTCTCTATTAGCACCGCCCA 185
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 379 GCTTCAACGAAGAGAAATCTCTTCTCGTAAAGATCGAGCTTTCTCTATTAGCACCGCCCA 438
Query 186 GGAGAGATTTCGTAACATGCGTCTCGTGGAGCAATATGATACTCACGATCC-AAAGGGGC 244
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 439 AGAGAGATTTCGTAACATGCGTCTCGTGGAGCAATATGATACTCACGATCCTAAA-GGGC 497
Query 245 ACTGTCTAGTTGCATTACCGTTTTTGATGAAAAGAACTAAAGTTATCGAGATTGTTGCCG 304
||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 498 ACTGTTTAGTTGCATTACCGTTTTTGATGAAGAGAACTAAAGTTATTGAGATTGTTGCTG 557
Query 305 CCAGGGACATTGTTTTTGCGCTTGCTCATTCTGGTGTTTGCGCAGCTTTTAGTAGAGAGT 364
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 558 CAAGGGACATTGTTTTTGCGCTTGCACATTCTGGTGTTTGCGCAGCTTTTAGTAGAGAGT 617
Query 365 CGAACAAAAGAATATGCTTTTTAAATGTTAGTCCAGATGAAGTCATCAGGAGCTTGTTCT 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 CGAACAAAAGAATATGCTTTTTAAATGTTAGTCCAGATGAAGTCATCAGGAGCTTGTTCT 677
Query 425 ACAACAAAAACAATGATTCTCTCATCACAGTTTCTGTTTATGCTTCAGACAATTTCAGCT 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 ACAACAAGAACAATGATTCTCTCATCACAGTTTCTGTTTATGCTTCAGACAATTTCAGCT 737
Query 485 CTTTGAAATGCAGATCCACTCGAATTGAGTATATTCTGAGAGGTCAGCCAGATGCAGGGT 544
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 738 CTTTGAAATGCAGATCCACTAGAATTGAGTATATTCTGAGAGGTCAGCCGGATGCAGGGT 797
Query 545 TTGCTCTTTTTGAGTCTGAATCATTAAAGTGGCCTGGTTTTGTTGAGTTTGATGATGTCA 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 TTGCTCTTTTTGAGTCTGAATCATTAAAGTGGCCTGGTTTTGTTGAGTTTGATGATGTCA 857
Query 605 ATGGAAAGGTGCTGACTTATTCTGCGCAGGACAGTGTGTACAAGGTTTTTGATCTGAAAA 664
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 858 ATGGAAAGGTGCTGACTTATTCTGCGCAGGACAGTGTATACAAGGTGTTTGATCTGAAAA 917
Query 665 ACTACACAATGCTATATTCGATATCAGATAAAAATGTTCAGGAAATTAAAATCAGTCCAG 724
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 918 ACTACACCATGCTATATTCGATATCAGATAAAAATGTCCAGGAAATTAAAATCAGTCCAG 977
Query 725 GGATAATGTTACTGATCTTCAAGAGAGCTGCCAGTCACGTTCCTCTGAAGATTCTGTCGA 784
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 978 GGATAATGTTATTGATCTTCAAGAGAGCTGCCAGTCATGTTCCTCTGAAGATTCTGTCGA 1037
Query 785 TAGAAGATGGCACAGTTCTCAAGTCCTTCAATCATTTGCTTCACCGAAACAAGAAAGTTG 844
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 TAGAAGATGGCACTGTTCTCAAGTCCTTCAATCATTTGCTTCACCGAAACAAGAAAGTTG 1097
Query 845 ATTTCATTGAACAATTCAATGAGAAACTTCTTGTTAAGCAAGAGAATGAGAACCTCCAAA 904
| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1098 ACTTCATTGAACAATTCAATGAGAAACTTCTTGTTAAGCAAGAGAATGAGAATCTTCAAA 1157
Query 905 TTCTTGACGTCAGAAATGCTGAGCTAATGGAAGTTAGTAGAGCTGAGTTCATGACACCGT 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 TTCTTGACGTCAGAAATGCTGAGCTAATGGAAGTTAGTAGAGCTGAGTTCATGACACCGT 1217
Query 965 CTGCATTCATATTTCTGTATGAGAACCAGTTGTTTCTGACATTCAGGAATCGAAATGTTT 1024
||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 1218 CTGCATTCATATTTCTGTATGAGAACCAGTTGTTTCTGACATTCAGGAACCGGAACGTTT 1277
Query 1025 CTGTGTGGAATTTTCGCGGAGAGCTCGTGACTTCCTTTGAGGACCATCTTCTATGGCATC 1084
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1278 CTGTGTGGAACTTTCGCGGAGAGCTCGTTACTTCCTTTGAGGACCATCTTCTATGGCATC 1337
Query 1085 CAGACTGTAACACAAATAATATCTACATAACAAGTGATCAAGATCTGATCATCTCGTACT 1144
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1338 CAGACTGTAACACTAATAATATCTACATTACAAGTGATCAAGATCTGATCATCTCGTACT 1397
Query 1145 GCAAAGCAGATACCGAAGATCAGTGGATAGAAGGAAATGCTGGATCGATCAATATCAGCA 1204
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1398 GCAAAGCAGATACCGAAGATCAGTGGATAGAAGGAAATGCGGGATCAATCAATATCAGCA 1457
Query 1205 ATATATTGACTGGGAAATGCTTAGCTAAAATTACACCAAGCAGTGGACCTCCAAAAGAAG 1264
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 1458 ATATATTGACTGGGAAATGCTTAGCTAAAATAACACCAAGCAGTGGGCCTCCAAAAGATG 1517
Query 1265 ATGAGAGCAGCAGCAGTAGTTGTTTGGGAAAGAACTCAAAGCAAAGAAGAAACGCGGTAG 1324
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1518 ATGAGAGCAGCAGCAGTAATTGTATGGGAAAGAACTCAAAGCAAAGAAGAAACGCTGTAG 1577
Query 1325 CTGAAGCTTTGGAAGACATAACCGCTCTTTTCTATGACGAAGAACGCAATGAGATATACA 1384
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1578 CTGAAGCTTTGGAAGACATAACCGCTCTTTTCTACGACGAAGAACGCAATGAGATATACA 1637
Query 1385 CAGGAAACAGACACGGCCTTGTTCATGTGTGGTCCAATTGATTTCACATTACATCATCAT 1444
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1638 CAGGAAACAGACACGGCCTTGTTCATGTGTGGTCCAATTGATTTCACAT-ACATCGTCAT 1696
Query 1445 CGTTAGC 1451
|||||||
Sbjct 1697 CGTTAGC 1703
> AT2G38630.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr2:16154067-16156579 REVERSE LENGTH=1897
Length=1897
Score = 1495 bits (809), Expect = 0.0
Identities = 1222/1420 (86%), Gaps = 33/1420 (2%)
Strand=Plus/Plus
Query 21 GATGGAAGGAAGAAGGATTACGGCAAGCCCTAGACCTTGTAGTGG-A--AGAAGAGTTGT 77
||||||||||||||| || | |||| ||||||||| ||||| || | ||||||||| |
Sbjct 280 GATGGAAGGAAGAAGAATCATAGCAAACCCTAGACCGTGTAGCGGTAGTAGAAGAGTTAT 339
Query 78 GGCTaaaaaaaGGTCTCGACCCGATGGATTCGTCAACAGTGTTAAAAAGCTTCAACGGAG 137
||||| || |||||||| ||||||||||||||||| || ||||||||||||||||| |
Sbjct 340 TGCTAAGAAGAGGTCTCGTCCCGATGGATTCGTCAATAGCGTTAAAAAGCTTCAACGCCG 399
Query 138 AGAAATCTCATCTCGTAAAGATCGAGCTTTCTCTATTAGCACCGCCCAGGAGAGATTTCG 197
||||||||| ||||||| |||||||||||||| || ||||| || || |||||||| ||
Sbjct 400 AGAAATCTCTTCTCGTATGGATCGAGCTTTCTCAATCAGCACTGCTCAAGAGAGATTCCG 459
Query 198 TAACATGCGTCTCGTGGAGCAATATGATACTCACGATCC-AAAGGGGCACTGTCTAGT-T 255
|| |||||||||||||||||||||||||| || ||||| ||| || ||||| |||| |
Sbjct 460 CAATATGCGTCTCGTGGAGCAATATGATACGCATGATCCTAAA-GGATACTGTTTAGTAT 518
Query 256 GCATTACCGT-TTTTGATGAAAAGAA-CTAAAGTTATCGAGATTGTTGCCGC-CAGGGAC 312
||||||| | ||| ||||| ||| | |||||||| ||||||||||| || | | |||
Sbjct 519 -CATTACC-TAACTTGTTGAAACGAAGC-AAAGTTATTGAGATTGTTGCTGCTC-GTGAC 574
Query 313 ATTGTTTTTGCGCTTGCTCAT-TCTGGTGTTTGCGCAGCTTTTAGTAGAGAGTCGAA-CA 370
||||| ||||| ||| ||| | |||||||| || ||| ||||||| |||||| |||| |
Sbjct 575 ATTGTCTTTGCTCTTACTC-TATCTGGTGTCTGTGCATCTTTTAGCAGAGAGACGAATAA 633
Query 371 AAAGAATATGCTTTTTAAATGTTAGTCCAGATGAAGTCA-TCAGGAGCTTGTTCTACAAC 429
|||| | |||||||||||||||||||| |||||||||| || |||| ||||||||||||
Sbjct 634 AAAG-GTTTGCTTTTTAAATGTTAGTCCTGATGAAGTCATTC-GGAGTTTGTTCTACAAC 691
Query 430 AAAAACAATGATTCTCTCATCACAGTTTCTGTTTATGCTTCAGACAATTTCAGCTCTTTG 489
|| ||||||||||||||||| || ||||||||||| || || ||||||| ||||||||||
Sbjct 692 AAGAACAATGATTCTCTCATTACTGTTTCTGTTTACGCCTCTGACAATTACAGCTCTTTG 751
Query 490 AAATGCAGATCCACTCGAATTGAGTATATTCTGAGAGGTC-AGCCAGATGCAGGGTTTGC 548
||||||||||||||| |||| || ||||||||||| |||| || |||| ||||| ||| |
Sbjct 752 AAATGCAGATCCACTAGAATCGAATATATTCTGAGGGGTCAAG-CAGACGCAGGATTTCC 810
Query 549 TCTTTTTGAGTCTGAATCATTAAAGTGGCCTGGTTTTGTTGAGTTTGATGATGTCAATGG 608
||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| |||||
Sbjct 811 TCTTTTTGAGTCTGAGTCACTAAAGTGGCCAGGTTTTGTTGAGTTTGATGATGTTAATGG 870
Query 609 AAAGGTGCTGACTTATTCTGCGCAGGACAGTGTGTACAAGGTTTTTGATCTGAAAAACTA 668
||||||||||| |||||||| ||||| ||||| |||||||| |||||||||||||||||
Sbjct 871 GAAGGTGCTGACATATTCTGCACAGGATAGTGTTTACAAGGTGTTTGATCTGAAAAACTA 930
Query 669 CACAATGCTATATTCGATATCAGATAAAAATGTTCAGGAAATTAAAATCAGTCCAGGGAT 728
| ||||||||||||||||||| |||||||| || |||||||| ||||||||||||||
Sbjct 931 TGCCTTGCTATATTCGATATCAGACAAAAATGTACAAGAAATTAAGATCAGTCCAGGGAT 990
Query 729 AATGTTACTGATCTTCAAGAGAGCTGCCAGTCACGTTCCTCTGAAGATTCTGTCGATAGA 788
|||| | |||| |||||||||||||| ||||| |||||| |||||||||| || || ||
Sbjct 991 AATGCTGTTGATTTTCAAGAGAGCTGCGAGTCATGTTCCTTTGAAGATTCTATCAATCGA 1050
Query 789 AGATGGCACAGTTCTCAAGTCCTTCAATCATTTGCTTCACCGAAACAAGAAAGTTGATTT 848
||||||||| |||| ||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1051 AGATGGCACTCTTCTGAAGTCCTTCCATCATTTGCTTCACCGAAATAAGAAAGTTGATTT 1110
Query 849 CATTGAACAATTCAATGAGAAA-CTTCTTGTTAAGCAAGAGAATGAGAACCTCCAAATTC 907
|||||||||||||||||| ||| ||||| |||||||||||||| ||||| || ||||| |
Sbjct 1111 CATTGAACAATTCAATGA-AAAGCTTCTAGTTAAGCAAGAGAACGAGAATCTACAAATAC 1169
Query 908 TTGACGT-CAGAAATGCTGAGCTAATGGAAGTTAGTAGAGCTGAGTTCATGACACCGTCT 966
||||||| | ||||||||||||| || |||||||| ||| |||| ||||||||||| ||
Sbjct 1170 TTGACGTTC-GAAATGCTGAGCTGATAGAAGTTAGCAGAACTGACTTCATGACACCATCA 1228
Query 967 GCATTCATATTTCTGTATGAGAACCAGTTGTTTCTGACATTCAGGAATCGAAATGTTTCT 1026
|||||||||||| |||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 1229 GCATTCATATTTTTGTATGAGAATCAGTTGTTTCTAACATTCAGGAACCGAAATGTTTCT 1288
Query 1027 GTGTGGAATTTTCGCGGAGAGCTCGTGACTTCCTTTGAGGACCATCTTCTATGGCATCCA 1086
||||||||||| ||||||||||| ||||| || |||||||| |||||||| |||||||||
Sbjct 1289 GTGTGGAATTTCCGCGGAGAGCTTGTGACCTCGTTTGAGGATCATCTTCTTTGGCATCCA 1348
Query 1087 GACTGTAACACAAATAATATCTACATAACAAGTGATCAAGATCTGATCATCTCGTACTGC 1146
|||||||||||||| ||||||||||||||||| |||||||||||||||||||| || |||
Sbjct 1349 GACTGTAACACAAACAATATCTACATAACAAGCGATCAAGATCTGATCATCTCATATTGC 1408
Query 1147 AAAGCAGATACCGAAGATCAGTGGATAGAAGGAAATGCTGGATCGATCAATATCAGCAAT 1206
|| |||||||| |||||||||||||||||||||||||| || ||||| || || ||||||
Sbjct 1409 AAGGCAGATACTGAAGATCAGTGGATAGAAGGAAATGCGGGGTCGATTAACATAAGCAAT 1468
Query 1207 ATATTGACTGGGAAATGCTTAGCTAAAATTACACCAAGCAGTGGACCTCCAAAAGAAGAT 1266
|| |||||||| |||||||||||||| || | | ||| | ||| ||||| || |||||
Sbjct 1469 ATCTTGACTGGTAAATGCTTAGCTAAGATAAAAGCAAATAATGGTCCTCCTAAGGAAGA- 1527
Query 1267 GAGAGCAGCAGCAGTAGTTG-TTTGGGAAAGAACTCAAAGCAAAGAAGAAACGCGGTAGC 1325
| || | ||||||||||| | |||||| || ||| | || || ||| ||||| ||
Sbjct 1528 G-GA-CTGCAGCAGTAGT-GATTTGGGGAATTCCTCTC-G-AAGGA-GAAGTGCGGTTGC 1581
Query 1326 TGAAGCTTTGGAAGACATAACCGCTCTTTTCTATGACGAAGAACGCAATGAGATATACAC 1385
||| ||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||
Sbjct 1582 TGAGGCTTTGGAAGACATAACCGCTCTCTTCTACGACGAAGAACGGAATGAAATATACAC 1641
Query 1386 AGGAAACAGACACGGCCTTGTTCATGTGTGGTCCAATTGA 1425
|||||||||||||||||| | ||||| ||||| ||||||
Sbjct 1642 AGGAAACAGACACGGCCTCCTCCATGTCTGGTCTAATTGA 1681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71535776625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5