BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg938360 Length=1318 Score E Sequences producing significant alignments: (Bits) Value AT3G54400.1 | Symbols: | Eukaryotic aspartyl protease family p... 2220 0.0 > AT3G54400.1 | Symbols: | Eukaryotic aspartyl protease family protein | chr3:20140058-20142642 REVERSE LENGTH=1554 Length=1554 Score = 2220 bits (1202), Expect = 0.0 Identities = 1280/1318 (97%), Gaps = 4/1318 (0%) Strand=Plus/Plus Query 3 AAATCAAGATCTTAAACAATGAGATCCCATCTCTTGATTTTGTTAATCTCTCTCTTAATC 62 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 26 AAATCAAGGTCTTAAACAATGAGATCCCATCTCTTGATTTTGTTAATCTCTCTCTTAATC 85 Query 63 TTGAAATCTGAATCCATAAACTGCAATGAAAAGAGCCATTCCTCAGATCTAAGAGTGTTC 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 86 TTGAAATCTGAATCCATAAACTGCAATGAAAAGAGCCATTCCTCAGATCTAAGAGTGTTC 145 Query 123 CACATTAACAGTCAATGTTCTCCATTCAAAACTTCTGTCTCATGGGAAGATACACTTCTT 182 ||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 146 CACATTAACAGTCTATGTTCTCCATTCAAAACTTCTGTTTCATGGGCAGATACACTTCTT 205 Query 183 CAAGACAAGGCTCGTTTCCTATACTTGTCAAGCCTCGCCGGCGTTAAGAAATCATCAGTC 242 ||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 206 CAAGATAAGGCTCGTTTCCTATACTTGTCAAGCCTCGCTGGCGTTAGGAAATCATCAGTT 265 Query 243 CCAATCGCCTCTGGTCGCGGC-ATCGTTCAGAGCCCGACTTATATCGTGAGGGCTAACAT 301 ||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||| Sbjct 266 CCAATCGCCTCTGGTCG-GGCCATCGTTCAGAGCCCGACTTACATCGTGAGGGCTAACAT 324 Query 302 CGGGACACCGGCTCAGGCCATGCTCGTGGCTCTTGACACTAGCAATGACGCTGCTTGGAT 361 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 325 CGGGACACCGGCTCAGCCCATGCTCGTGGCTCTTGACACTAGCAATGACGCTGCTTGGAT 384 Query 362 TCCTTGTTCTAGCTGCGTTGGTTGTTCTTCCTCAGTTCTCTTTGACCCTTCCAAGTCAAG 421 |||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 385 TCCTTGTTCTGGCTGCGTTGGCTGTTCTTCCTCTGTTCTCTTTGACCCTTCCAAGTCAAG 444 Query 422 CTCCTCTCGTACTCTTCAATGCGAAGCTCCTCAGTGTAAACAGGCTCCAAATCCAAGTTG 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 445 CTCCTCTCGTACTCTTCAATGCGAAGCTCCTCAGTGTAAACAGGCTCCAAATCCAAGTTG 504 Query 482 CACCGTAAGCAAATCATGTGGTTTCAACATGACCTACGGTGGTTCAGCAATCGAAGCATA 541 ||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 505 CACAGTAAGCAAATCATGTGGTTTCAACATGACCTACGGTGGTTCAACCATCGAAGCATA 564 Query 542 TCTGACACAAGACACACTAACATTGGCCACTGACGTCATCCCAAACTACACCTTTGGGTG 601 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 565 TCTGACACAAGACACACTAACATTGGCCAGTGACGTCATCCCAAACTACACCTTTGGGTG 624 Query 602 CATCAACAAAGCTAGTGGAACATCGTTGCCAGCGCAAGGACTCATGGGCTTAGGTCGTGG 661 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 625 CATCAACAAAGCTAGTGGAACATCGTTGCCAGCGCAAGGACTCATGGGCTTAGGTCGTGG 684 Query 662 TCCATTGTCTTTAATCTCACAGTCACAAAATCTTTACCAGTCTACATTCTCGTATTGCTT 721 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 685 TCCATTGTCTTTAATCTCACAGTCACAAAATCTTTATCAGTCTACATTCTCGTATTGCTT 744 Query 722 GCCTAATAGTAAGTCCAGCAATTTCTCCGGATCGCTAAGATTGGGACCTAAGAACCAACC 781 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 745 GCCTAATAGTAAGTCCAGCAATTTCTCCGGATCACTAAGATTGGGACCTAAGAACCAACC 804 Query 782 GATCCGGATCAAGACCACTCCATTGTTAAAGAACCCTAGAAGATCATCGCTTTACTATGT 841 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 805 GATCCGGATCAAGACCACTCCATTGTTAAAGAACCCTAGAAGATCATCGCTTTACTATGT 864 Query 842 TAACTTGGTTGGAATTCGTGTCGGGAATAAAATTGTGGATATTCCTACAAGTGCACTAGC 901 |||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| || Sbjct 865 TAACTTGGTTGGGATTCGTGTCGGAAACAAAATTGTGGATATTCCTACAAGTGCACTCGC 924 Query 902 CTTTGATCCGGCCACCGGAGCCGGCACCATCTTTGACTCCGGGACGGTCTACACGAGGCT 961 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 925 CTTTGATCCGGCCACCGGAGCCGGCACCATCTTTGACTCGGGGACGGTCTACACAAGGCT 984 Query 962 AGTCGAACCAGCTTACGTGGCGGTGAGAAACGAGTTCAGGCGACGAGTTAAGAACGCAAA 1021 |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 985 AGTCGAACCAGCTTACGTGGCGGTGAGAAACGAGTTCAGGAGACGTGTTAAGAACGCAAA 1044 Query 1022 CGCAACTTCACTAGGAGGTTTCGACACATGCTACTCCGGCTCCGTCGTGTTCCCGTCGGT 1081 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1045 CGCAACTTCACTAGGAGGTTTCGACACATGCTACTCCGGCTCCGTCGTGTTCCCGTCGGT 1104 Query 1082 GACGTTTATGTTCGCCGGAATGAACGTGACTCTGCCTCCGGACAACCTTCTCATCCACAG 1141 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1105 GACGTTTATGTTCGCCGGAATGAACGTGACTCTGCCTCCAGACAACCTTCTCATCCACAG 1164 Query 1142 CTCCGCAGGTAACCTCAGCTGCCTCGCCATGGCTGCAGCTCCGACCAACGTTAACTCTGT 1201 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1165 CTCCGCAGGTAACCTCAGCTGCCTCGCCATGGCTGCAGCTCCGGTCAACGTTAACTCTGT 1224 Query 1202 CCTTAACGTCATCGCTAGTATGCAACAACAGAACCACCGTGTTCTCATCGACGTTCCAAA 1261 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 1225 CCTTAACGTCATCGCTAGTATGCAGCAACAGAACCACCGAGTTCTCATCGACGTTCCAAA 1284 Query 1262 TTCCAGGCTCGGCATTTCCCGTGAAACTTGCACCTAAGTTTTATCGGATT-GTGTTTT 1318 |||||||||||| ||||||||||||||||||||||||||||||||| ||| || |||| Sbjct 1285 TTCCAGGCTCGGAATTTCCCGTGAAACTTGCACCTAAGTTTTATCG-ATTTGTATTTT 1341 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64859104140 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5