BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg938418 Length=556 Score E Sequences producing significant alignments: (Bits) Value AT3G54900.1 | Symbols: CXIP1, ATGRXCP | CAX interacting protein... 815 0.0 > AT3G54900.1 | Symbols: CXIP1, ATGRXCP | CAX interacting protein 1 | chr3:20341588-20342393 REVERSE LENGTH=806 Length=806 Score = 815 bits (441), Expect = 0.0 Identities = 511/544 (94%), Gaps = 7/544 (1%) Strand=Plus/Plus Query 18 AAAATGGCTCTCCGATCTGTCAAAACGCCGACCTTGATAACTCCGGTCACCGTCGTCTCC 77 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 20 AAAATGGCTCTCCGATCTGTCAAAACGCCGACCTTGATAACTTCGGTCGCCGTCGTCTCC 79 Query 78 TCCTCCGTAATCAACAAGCCACACTCTATAAGATTCTCTCTTAAACCAACGGCGGCACTC 137 |||||||| | ||||||||| |||||||| ||||||||||||||||||||| |||||||| Sbjct 80 TCCTCCGTTACCAACAAGCCTCACTCTATCAGATTCTCTCTTAAACCAACGTCGGCACTC 139 Query 138 GCCGTTCACAACCGTCAGCCATCGTTCTAC-G---G--TCTCAAGCTCAAACCAACAAAA 191 | ||| || |||| ||||| |||||||||| | | ||||||||| |||||||| ||| Sbjct 140 GTCGTCCATAACCATCAGCTATCGTTCTACGGTTCGAATCTCAAGCTGAAACCAACTAAA 199 Query 192 TTCCGATGCTCTGCGTCGGCGCTTACGCCGCAACTTAAAGATACGCTGGAGAAACTGGTG 251 ||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 200 TTCCGATGCTCAGCGTCGGCTCTTACGCCGCAACTTAAAGACACGCTGGAGAAACTGGTG 259 Query 252 AATTCGGAGAAAGTGGTTCTGTTCATGAAAGGAACGAGAGATTTCCCGATGTGTGGATTC 311 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 260 AATTCGGAGAAAGTGGTTCTGTTTATGAAAGGAACGAGAGACTTCCCGATGTGTGGATTC 319 Query 312 TCCAACACTGTGGTTCAGATCTTGAAGAATTTGAATGTTCCTTTTGAAGATGTGAATATT 371 |||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||| Sbjct 320 TCCAACACTGTGGTTCAGATTTTGAAGAATCTGAATGTTCCTTTCGAAGATGTGAATATT 379 Query 372 CTGGAGAATGAGATGTTGAGGCAAGGACTTAAAGAGTATTCGAATTGGCCGACGTTTCCT 431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 380 CTGGAGAATGAGATGTTGAGGCAAGGACTTAAAGAGTATTCGAATTGGCCGACGTTTCCT 439 Query 432 CAGCTTTATATCGGCGGTGAGTTTTTCGGTGGTTGTGATATTACTCTTGAGGCGTTTAAG 491 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 440 CAGCTTTATATCGGCGGTGAGTTTTTCGGTGGTTGTGATATTACTCTTGAGGCGTTTAAG 499 Query 492 AGTGGGGAATTGCAGGAAGAGGTGGAGAAAGCTATGTGCTCTTGATTCTGGTT-CAATAC 550 | ||| |||||||||||||||||||||||||||||||||||||||| ||| || |||||| Sbjct 500 ACTGGAGAATTGCAGGAAGAGGTGGAGAAAGCTATGTGCTCTTGATCCTGATTTCAATAC 559 Query 551 TTGG 554 |||| Sbjct 560 TTGG 563 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26674332057 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5