BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938420
Length=1531
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54930.1 | Symbols: | Protein phosphatase 2A regulatory B s... 2438 0.0
> AT3G54930.1 | Symbols: | Protein phosphatase 2A regulatory B
subunit family protein | chr3:20350839-20352948 REVERSE LENGTH=1924
Length=1924
Score = 2438 bits (1320), Expect = 0.0
Identities = 1465/1534 (96%), Gaps = 14/1534 (1%)
Strand=Plus/Plus
Query 3 TTAGATTTTGAATCGAAATCGAAGATGTTCAACAAAATCATAAAACTGGGTCAGAAGAAA 62
||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 TTACATTTTGATTCGGAATCGAAGATGTTCAACAAAATCATAAAACTGGGTCAGAAGAAA 221
Query 63 TTCAACAAATCAGATCAACATCACCAAGAT---------AACAACAAC---ACCTCCACC 110
|||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 222 TTCAACAAATCAGATCAACATCACCAAGATAACAACAACAACAACAACAATACCTCCACC 281
Query 111 AACACCGTCGTTCGCGGCAGCCGTACCACCAC-CGCCGCTCCATCTTCTGTTTCAAATGG 169
|||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||
Sbjct 282 AACACCGTCGTTCGCGGCAGCCGTACCACCACAC-CCGCTCCATCCTCTGTTTCAAATGG 340
Query 170 AGAATCTCAGACAACGGCTCAATCTCCTTCACAGACACCGAACCACCCAATGTTCACATC 229
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 341 AGAATCTCAGACAACAGCTCAATCTCCTTCACAGACACCAAACCACCCAATGTTCACAAC 400
Query 230 AACACCGATCCTCGAAGTACTTCCATTGTTAAAAGACGTGTCTTCCTCAGATCGACCTCT 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 AACACCGATCCTCGAAGTACTTCCATTGTTAAAAGACGTGTCTTCCTCAGATCGACCTCT 460
Query 290 CCTCTTCATGAAGAAGGCTCACATGTGTTCTTGCCAATGCGATTTCTCTGATACTTTGAT 349
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 461 TCTCTTCATGAAGAAAGCTCACATGTGTTCTTGCCACTGCGATTTCTCTGATACTTTGAT 520
Query 350 AATGCCACGCGAGAAAGAGATCAAAAGACAGACTCTTCTTGAATTGGTTGATTTCCTTCA 409
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 521 AATGCCACGCGAGAAAGAGATCAAAAGACAGACACTCCTTGAATTGGTTGATTTCCTTCA 580
Query 410 CTCTTCCTCTGGTAAAGTCAATGAGACGATGCAGAGTGAGCTTATACGGATGGTTTCAGC 469
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 581 CTCTTCTTCTGGTAAAGTCAATGAGACGATGCAGAGTGAGCTTATACGTATGGTTTCTGC 640
Query 470 TAACATTTTCCGGTGTCTCCCACCGGCTCACCATGAGAACACTGGAGCTCCTCCTGAAGG 529
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 641 TAACATTTTCCGGTGTCTCCCACCGGCTTACCATGAGAACACTGGTGCTCCTCCTGAAGG 700
Query 530 GAATGATCCCGAAGAAGAAGAGCCTTATCTTGAGCCATGGTGGCCTCATTTGCAGCTCGT 589
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 GAATGATCCTGAAGAAGAAGAGCCTTATCTTGAGCCATGGTGGCCTCATTTGCAGCTCGT 760
Query 590 TTACGAGCTTCTTTTGCGGTATGTAGTGTCTTCCGAAATCGAACCTAAGACTGCGAAAAA 649
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 761 TTACGAGCTTCTTTTGCGGTATGTAGTCTCTTCCGAAATCGAACCTAAAACTGCGAAAAA 820
Query 650 GTTCATCAATCACACCTTTGTCTCGAGGTTACTCGATTTGTTTGACTCTGAGGATCCTAG 709
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 821 GTTCATCAATCACACCTTTGTCTCGAGGTTACTTGATTTGTTTGACTCTGAGGATCCTAG 880
Query 710 GGAGAGGGAATACTTGAAAACTGTTCTTCATAGGATCTATGGCAAGTTTATATTTCACCG 769
||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 881 GGAGAGGGAGTATTTGAAAACTGTTCTTCATAGAATCTATGGCAAGTTTATATTTCACCG 940
Query 770 CCCGTTTATCAGGTGTTCCATTTATAACATTTTCTACAAGTTCTTGTATGAGACTGAGAG 829
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 941 ACCGTTTATCAGATGTTCGATTTATAACATTTTCTACAAGTTCTTGTATGAGACTGAAAG 1000
Query 830 GTGCATTGGCATTGGAGAGTTATTGGAGATCCTAGGAAGTGTGATCAATGGATTTACAGT 889
||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1001 GTGTATTGGCATTGGAGAGTTATTGGAGATCTTAGGAAGTGTGATCAATGGTTTTACAGT 1060
Query 890 ACCTATGAGAGAGGAGCATCGGTTGTATCTTGTGAAAGCTATTTTGCCACTCCACAAGTC 949
||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||
Sbjct 1061 ACCTATGAGAGAGGAGCATAGGCTGTATCTTGTGAAAGCTATTTTGCCACTACACAAGTC 1120
Query 950 TAAGGGTATCTCGATTTACCACCAGCAGTTGGCGTATTGTGTGACACAGTTTGTGGAGAA 1009
||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1121 TAAAGGTATCTCGATTTACCACCAGCAGTTGGCGTATTGCGTGACACAGTTTGTTGAGAA 1180
Query 1010 AGATTACAAATTGGCTGATACCGTCATCCGCGGGTTGTTGAAGTTTTGGCCGCTTACGAA 1069
|||||| || ||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 1181 AGATTATAAGTTGGCTGATACTGTGATCCGCGGGTTGTTGAAGTTTTGGCCGCTTACCAA 1240
Query 1070 TTGTCAAAAGGAGGTTCTCTTCTTGGGAGAGTTGGAAGAAGTCTTGGATGCTACAGAGCC 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 TTGTCAAAAGGAGGTTCTCTTCTTGGGAGAGTTGGAAGAAGTCTTGGATGCTACAGAGCC 1300
Query 1130 CTCTGAGTTTCAGCAATGTGTTGTTCCTCTGTTTACGCAGATTGGGAAATGTCTTAATAG 1189
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1301 CTCTGAGTTTCAGCAATGTGTTGTTCCTCTGTTTACACAGATTGGGAAATGTCTTAATAG 1360
Query 1190 CGCACACTTCCAGGTGGCAGAGAGAGCTCTCTTCTTGTGGAACAATGAACATATCGTAGG 1249
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1361 TGCACACTTCCAGGTGGCAGAGAGAGCGCTCTTCTTGTGGAACAATGAACATATCGTAGG 1420
Query 1250 CCTGATAGCTCAGAACAAAGACGTGATCTTTCCGATAATCTTTGAAGCATTGGAGAGGAA 1309
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1421 GCTGATAGCTCAGAACAAAGACGTGATCTTTCCGATAATCTTTGAAGCGTTGGAGAGGAA 1480
Query 1310 CATGAAAGGACATTGGAACCAAGCCGTGCACGGTCTCTCTGAGAACGTTAGAAGAATGTT 1369
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1481 CATGAAAGGACATTGGAACCAAGCGGTGCATGGTCTCTCTGAGAACGTTAGAAGAATGTT 1540
Query 1370 TCTGGAGATGGACACTGAGCTCTTTGAGGAGTGCGAGAAACAACATCTCGAGAACGAAGC 1429
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1541 TCTGGAGATGGACACTGAGCTCTTTGAGGAGTGCGAGAAACAATATCTCGAGAACGAAGC 1600
Query 1430 TAAGGCATGCGAGTTGCTGGAACAAAGAGAATTGACATGGAAGAGACTCGAAGAAGCTGC 1489
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1601 TAAGGCATGCGAGTTGTTGGAACAAAGAGAATTGACATGGAAGAGACTTGAAGAAGCTGC 1660
Query 1490 TTCTCTAGCTGCTAACTAAATCCCATTGACGACT 1523
||||||||||||||||||| || |||||| ||||
Sbjct 1661 TTCTCTAGCTGCTAACTAATTCTCATTGATGACT 1694
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75551820225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5