BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938433
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55040.1 | Symbols: GSTL2 | glutathione transferase lambda 2... 1386 0.0
> AT3G55040.1 | Symbols: GSTL2 | glutathione transferase lambda
2 | chr3:20398538-20400346 REVERSE LENGTH=1100
Length=1100
Score = 1386 bits (750), Expect = 0.0
Identities = 874/932 (94%), Gaps = 16/932 (2%)
Strand=Plus/Plus
Query 1 GAAAGTGAAAGCTGTGAGGTATGAGTGTGGGACTGAAAATTAGCGTGTGCTTATATCCAT 60
|||||||||||||||||||||||||||||||||||||| |||||| || |||| |||||
Sbjct 22 GAAAGTGAAAGCTGTGAGGTATGAGTGTGGGACTGAAAGTTAGCGCGTTCTTACATCCAA 81
Query 61 CGCTTGCGTTATCCGCTAGAGATTTCTCTCCTC-CTTCCTCATCA---TCTCTCTATCTT 116
|||||||||||||| | |||||| ||||| ||| ||||||||||| ||||||||||||
Sbjct 82 CGCTTGCGTTATCCTCGAGAGATGTCTCT-CTCTCTTCCTCATCATCTTCTCTCTATCTT 140
Query 117 GATCGGAAAATTCTCCGACCAGGCTCCGGGAGGCGATGGTGCAAATCCAGTGGGAAACGT 176
|||||||||||||||||||||||||||||||| || ||||| |||||| ||
Sbjct 141 GATCGGAAAATTCTCCGACCAGGCTCCGGGAGACGGTGGTGTAAATCC---------CGA 191
Query 177 AGAACCGAACCAATATTGGCTGTTGTAGAGTCAAGTCGAGTACCGGAGCTTGATTCTTCT 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 AGAACCGAACCAATATTGGCTGTTGTAGAGTCAAGTCGAGTACCGGAGCTTGATTCTTCT 251
Query 237 TCAGAACCAGTTCAAGTGTTCGATGGATCAACAAGGTTGTACATATCTTACACTTGCCCA 296
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 TCAGAACCAGTTCAAGTATTCGATGGATCAACAAGGTTGTACATATCTTACACTTGCCCA 311
Query 297 TTTGCTCAGCGTGCGTGGATTGCTCGCAACTACAAGGGTCTGCAAAACAAGATAGAACTC 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 TTTGCTCAGCGTGCGTGGATTGCTCGCAACTACAAGGGTCTGCAAAACAAGATAGAACTT 371
Query 357 GTACCGATTGATCTTAAAAACAGGCCTGCTTGGTATAAGGAGAAAGTTTACGCAGCCAAC 416
|||||||| |||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 372 GTACCGATCGATCTTAAAAACAGGCCTGCTTGGTATAAGGAGAAAGTTTACTCGGCTAAC 431
Query 417 AAGGTGCCTGCATTAGAGCACAATAACCGAGTATTGGGAGAGAGCCTTGATCTGATTAAG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 AAGGTGCCTGCATTAGAGCACAATAACCGAGTATTGGGAGAGAGCCTTGATCTGATTAAG 491
Query 477 TACATTGACACTAATTTTGAAGGGCCTTCACTTACACCTGATGGTTTAGAGAAGCAAGCA 536
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 492 TACATTGACACTAATTTTGAAGGGCCTTCGCTTACACCCGATGGTTTAGAGAAGCAAGTT 551
Query 537 GTAGCTGATGAGTTACTCTCCTACACTGACTCCTTCTCCAAGGCTGTGAGATCCACATTA 596
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 552 GTAGCTGATGAGTTACTCTCTTACACTGACTCCTTCTCCAAGGCTGTAAGATCCACATTA 611
Query 597 AACGGCACTGACAGTAATGCAGCAGATGCTGCATTTGATTACATCGAGCAGGCTCTGATC 656
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 612 AACGGCACTGACACTAATGCAGCAGATGTTGCATTTGATTACATCGAGCAGGCTCTT-TC 670
Query 657 -AAATTCAATGAAGGGCCTTTCTTCCTTGGCCAATTTAGTTTGGTTGATGTTGCATATGC 715
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 671 CAAATTCAATGAAGGGCCTTTCTTTCTTGGTCAATTTAGTTTGGTTGATGTTGCATATGC 730
Query 716 TCCATTCATAGAGAGATTTCAGCTTATCTTAAGTGACGTGATAAATGTGGATATCAAATC 775
||| |||||||||||||||| ||||||||||||||| ||||| || || ||||| | |||
Sbjct 731 TCCTTTCATAGAGAGATTTCGGCTTATCTTAAGTGATGTGATGAACGTCGATATTACATC 790
Query 776 TGGTCGGCCTAACCTTGCCCTTTGGATTCAGGAGATGAACAAGATCGAAGCTTACACCGA 835
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 791 TGGTCGGCCTAACCTTGCCCTTTGGATTCAGGAGATGAACAAAATCGAAGCTTACACCGA 850
Query 836 AACCCGTCAAGATCCACAAGAGCTAGTTGAAAGATACAAGAGACGAGTCCAAGCAGAAGC 895
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 851 AACCCGTCAAGATCCACAAGAGCTTGTTGAAAGATACAAGAGACGAGTCCAAGCAGAAGC 910
Query 896 GCGTCTCTAACCAGATGGTTATCCGGATTTCT 927
||||||||||||||||||| ||||||| |||
Sbjct 911 ACGTCTCTAACCAGATGGTTCTCCGGATATCT 942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45311200594
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5