BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938476
Length=805
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55440.1 | Symbols: ATCTIMC, TPI, CYTOTPI | triosephosphate ... 1327 0.0
> AT3G55440.1 | Symbols: ATCTIMC, TPI, CYTOTPI | triosephosphate
isomerase | chr3:20553690-20556560 FORWARD LENGTH=1351
Length=1351
Score = 1327 bits (718), Expect = 0.0
Identities = 771/797 (97%), Gaps = 1/797 (0%)
Strand=Plus/Plus
Query 3 CTG-AAAAAGCTTGAGATAATGGCCAGAAAGTTCTTCGTCGGAGGTAACTGGAAATGTAA 61
||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 86 CTGAAAAAAATTTGAGATAATGGCCAGAAAGTTCTTCGTCGGAGGCAACTGGAAATGTAA 145
Query 62 CGGAACTGCTGAGGAGGTGAAGAAGATTGTGAACACTCTTAATGAAGCTCAAGTACCTTC 121
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 146 CGGAACTGCTGAGGAGGTGAAGAAGATTGTGAACACTCTTAATGAAGCTCAGGTTCCTTC 205
Query 122 ACAGGATGTTGTAGAGGTTGTGGTTAGCCCTCCATATGTTTTCCTTCCCCTGGTTAAGAG 181
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 206 ACAGGATGTTGTAGAGGTTGTGGTTAGCCCTCCATATGTTTTTCTTCCCCTGGTTAAGAG 265
Query 182 CACATTGAGGTCTGACTTTTTTGTTGCGGCACAAAACTGTTGGGTTAAGAAGGGAGGTGC 241
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 266 CACATTGAGGTCTGACTTTTTTGTTGCGGCACAAAACTGTTGGGTTAAGAAAGGAGGTGC 325
Query 242 TTACACTGGTGAAGTGAGTGCTGAGATGCTTGTGAACTTGGATATCCCATGGGTTATCCT 301
|| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 326 TTTCACTGGTGAAGTGAGTGCGGAGATGCTTGTGAACTTGGATATTCCATGGGTTATCCT 385
Query 302 TGGTCACTCTGAAAGGAGGGCAATCCTTAATGAATCAAACGAGTTTGTTGGAGACAAGGT 361
|||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||
Sbjct 386 TGGTCACTCTGAAAGGAGGGCAATCCTTAATGAATCAAGCGAGTTCGTCGGAGACAAGGT 445
Query 362 TGCCTATGCACTTGCTCAAGGTTTGAAAGTGATTGCTTGTGTTGGTGAGACTCTTGAGGA 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 TGCCTATGCACTTGCTCAAGGTTTGAAAGTGATTGCTTGTGTTGGTGAGACTCTTGAGGA 505
Query 422 GCGGGAAGCTGGGTCGACCATGGATGTTGTGGCTGCCCAGACCAAAGCTATCGCTGATCG 481
|||||||||||| |||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 506 GCGGGAAGCTGGATCGACCATGGATGTTGTGGCTGCCCAGACCAAGGCTATTGCCGATCG 565
Query 482 GGTGTCAAACTGGTCAAATGTTGTCATAGCCTATGAGCCAGTGTGGGCCATTGGAACCGG 541
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 566 GGTGACAAACTGGTCAAATGTTGTCATAGCCTATGAACCAGTGTGGGCCATTGGAACCGG 625
Query 542 AAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAGTACACGATGAGCTGAGGAAATGGCTGGC 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 AAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAGTACACGATGAGCTGAGGAAATGGCTGGC 685
Query 602 CAAGAACGTGAGTGCTGATGTTGCTGCTACAACCCGCATCATTTATGGAGGATCCGTCAA 661
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 686 CAAGAACGTGAGTGCTGATGTCGCTGCTACAACCCGCATCATTTATGGAGGATCCGTCAA 745
Query 662 TGGTGGTAACTGCAAGGAGCTAGGTGGTCAGGCCGATGTTGATGGTTTCTTGGTCGGTGG 721
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 746 TGGTGGTAACTGCAAGGAGCTAGGTGGACAGGCCGATGTTGATGGTTTCTTGGTCGGTGG 805
Query 722 TGCTTCTCTAAAGCCTGAGTTTATCGACATCATTAAGGCTGCAGAGGTGAAGAAAAGCGC 781
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 806 TGCTTCTCTAAAGCCTGAGTTTATCGACATCATTAAGGCCGCAGAGGTGAAGAAAAGTGC 865
Query 782 TTAATGAGTTCATTAAG 798
||||||| ||||||||
Sbjct 866 CTAATGAGCTCATTAAG 882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39182634660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5