BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938480

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G55470.1 | Symbols:  | Calcium-dependent lipid-binding (CaLB...   904    0.0  


> AT3G55470.1 | Symbols:  | Calcium-dependent lipid-binding (CaLB 
domain) family protein | chr3:20564236-20566329 FORWARD LENGTH=828
Length=828

 Score =  904 bits (489),  Expect = 0.0
 Identities = 528/547 (97%), Gaps = 2/547 (0%)
 Strand=Plus/Plus

Query  3    aaaaaaaaaCTCTATAGAGATGGCTGTTGGAATCCTTGAGGTTAGTCTGATCAGTGGCAA  62
            |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  102  AAAAAATAACTCTACAGAGATGGCTGTTGGAATCCTTGAGGTTAGTCTGATCAGTGGCAA  161

Query  63   AGGTCTTAAGCGCTCTGATTTTCTTGGCAAGATAGATCCATATGTTGAGATCCAATACAA  122
            |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  162  AGGTCTCAAGCGCTCTGATTTTCTTGGTAAGATAGATCCATATGTTGAGATCCAATACAA  221

Query  123  AGGCCAAACCCGCAAAAGCAGCGTTGCTAAAGAAGATGGAGGTAGAAATCCGACATGGAA  182
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  222  AGGGCAAACCCGCAAAAGCAGCGTTGCTAAAGAAGATGGAGGTAGAAATCCGACATGGAA  281

Query  183  TGATAAATTGAAATGGAGAGCAGAGTTTCCTGGCTCCGGCGCGGACTACAAACTCATCGT  242
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  282  TGATAAATTGAAATGGAGAGCAGAGTTTCCTGGCTCCGGCGCCGACTACAAACTCATCGT  341

Query  243  CAAAGTCATGGATCATGATACTTTCTCCACCGATGATTTCATCGGCGAAGCCACGGTACA  302
            |||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||
Sbjct  342  CAAAGTCATGGATCATGATACTTTCTCCTCTGACGATTTCATTGGCGAAGCCACGGTACA  401

Query  303  TGTGAAAGAGCTGTTGGAAATGGGAGTGGAGAAGGGAACGGCTGAGCTAAGGCCAACCAA  362
            |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  402  TGTGAAAGAGCTATTGGAAATGGGAGTGGAGAAGGGAACGGCGGAGCTAAGGCCAACCAA  461

Query  363  GTACAACATTGTTGACTCCGATCTCTCCTTTGTCGGCGAGCTTCTCATCGGAGTTTCTTA  422
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  462  GTACAACATTGTTGACTCCGATCTCTCCTTTGTCGGCGAGCTTCTCATTGGAGTTTCTTA  521

Query  423  CTCTCTTTTGCAAGACAGGGGAATGGATGGGGAACAGTTTGGAGGATGGAAGCATAGCCG  482
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| 
Sbjct  522  CTCTCTTTTGCAAGACAGGGGAATGGATGGAGAACAGTTTGGAGGATGGAAGCATAGCCA  581

Query  483  AGTTGATTAGTTTCGTTTCGTAAAACTGCTGATTTTATCTTCTTCTT-TAATCTTTAGTG  541
            ||||||||||||| ||||| ||||||||||||||||||||||||||| || |||||||||
Sbjct  582  AGTTGATTAGTTTGGTTTCTTAAAACTGCTGATTTTATCTTCTTCTTCTA-TCTTTAGTG  640

Query  542  TCAACAT  548
            |||||||
Sbjct  641  TCAACAT  647



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26272458881


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5