BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938493
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55560.1 | Symbols: AGF2, AHL15 | AT-hook protein of GA feed... 1624 0.0
> AT3G55560.1 | Symbols: AGF2, AHL15 | AT-hook protein of GA feedback
2 | chr3:20604616-20606380 REVERSE LENGTH=1588
Length=1588
Score = 1624 bits (879), Expect = 0.0
Identities = 977/1024 (95%), Gaps = 7/1024 (1%)
Strand=Plus/Plus
Query 16 aaggaaaaaTCAATGGCGAATCCTTGGTGGGTAGGGAATGTTGCGATCGGTGGAGTTGAG 75
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 AAGAAAAAAAGAATGGCGAATCCTTGGTGGGTAGGGAATGTTGCGATCGGTGGAGTTGAG 415
Query 76 AGTCCAGTAACGTCATCAGCTCCTTCTTTGCACCACAGGAACAGT------AACAACCCA 129
|||||||| ||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 416 AGTCCAGTGACGTCATCAGCTCCTTCTTTGCACCACAGAAACAGTAACAACAACAACCCA 475
Query 130 CCGACTATGACTCGTTCGGATCCAAGATTGGACCATGACTTCACCACCAACAACAGTGGA 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CCGACTATGACTCGTTCGGATCCAAGATTGGACCATGACTTCACCACCAACAACAGTGGA 535
Query 190 AGCCCTAATACTCAGACTCTGAGCCAAGAAGAACAGAATAGCCGAGACGAGCAACCAGCT 249
||||||||||| ||||||| |||||||||||||||||| ||| |||||||||||||||||
Sbjct 536 AGCCCTAATACCCAGACTCAGAGCCAAGAAGAACAGAACAGCAGAGACGAGCAACCAGCT 595
Query 250 GTCGAACCCGGATCCGGATCCGGGTCTACGGGTCGGCGTCCGAGAGGTAGACCTCCTGGT 309
|| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 596 GTTGAACCCGGATCCGGATCCGGGTCTACGGGTCGTCGTCCTAGAGGTAGACCTCCTGGT 655
Query 310 TCCAAGAACAAACCAAAGAGTCCAGTGGTTGTTACCAAAGAAAGCCCTAACTCTCTGCAG 369
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 656 TCCAAGAACAAACCAAAGAGTCCAGTTGTTGTTACCAAAGAAAGCCCTAACTCTCTCCAG 715
Query 370 AGCCATGTTCTTGAGATTGCTACGGGTGCTGACGTGGCGGAAAGCTTAAACGCCTTTGCT 429
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 716 AGCCATGTTCTTGAGATTGCTACGGGAGCTGACGTGGCGGAAAGCTTAAACGCCTTTGCT 775
Query 430 CGTAGACGCGGCCGTGGCGTTTCTGTGCTTAGCGGTAGCGGTTTGGTTACTAATGTTACT 489
|||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 776 CGTAGACGCGGCCGGGGCGTTTCGGTGCTGAGCGGTAGTGGTTTGGTTACTAATGTTACT 835
Query 490 CTGCGTCAGCCTGCTGCCTCTGGTGGAGTTGTGAGCTTACGTGGTCAGTTTGAGATCTTG 549
||||||||||||||||| || ||||||||||| || ||||||||||||||||||||||||
Sbjct 836 CTGCGTCAGCCTGCTGCATCCGGTGGAGTTGTTAGTTTACGTGGTCAGTTTGAGATCTTG 895
Query 550 TCTATGTGTGGTGCTTTTCTTCCTACTTCTGGTTCTCCGGCTGCAGCTGCTGGTTTAACC 609
||||||||||| |||||||||||||| ||||| ||||| |||||||| ||||||||||||
Sbjct 896 TCTATGTGTGGGGCTTTTCTTCCTACGTCTGGCTCTCCTGCTGCAGCCGCTGGTTTAACC 955
Query 610 ATTTACTTAGCTGGAGCTCAAGGTCAAGTTGTGGGAGGTGGAGTTGCGGGGCCGCTTATC 669
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 956 ATTTACTTAGCTGGAGCTCAAGGTCAAGTTGTGGGAGGTGGAGTTGCTGGCCCGCTTATT 1015
Query 670 GCCTCTGGACCGGTTATTGTGATAGCTGCTACGTTTTGCAATGCCACTTATGAGAGGTTA 729
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GCCTCTGGACCCGTTATTGTGATAGCTGCTACGTTTTGCAATGCCACTTATGAGAGGTTA 1075
Query 730 CCGGTTGAGGAAGAACAACAACAAGAGCAGCCGCTTCAACTAGAAGATGGGAAGAAGCAG 789
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1076 CCGATTGAGGAAGAACAACAGCAAGAGCAGCCGCTTCAACTAGAAGATGGGAAGAAGCAG 1135
Query 790 AAAGAGGAGAATGATGATAACGAGAGTGGGAATAATGGAAACGAAGGATCGATGCAGCCA 849
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1136 AAAGAAGAGAATGATGATAACGAGAGTGGGAATAACGGAAACGAAGGATCGATGCAGCCG 1195
Query 850 CCGATGTATAATATGCCTCCTAATTTTATCCCAAATGGTCATCAAATGGCTCAACACGAC 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 CCGATGTATAATATGCCTCCTAATTTTATCCCAAATGGTCATCAAATGGCTCAACACGAC 1255
Query 910 GTGTATTGGGGTGCTCCTCCGCCTCGTGCTCCTCCTTCATATTGAT-AGTTAGATAGGCG 968
||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1256 GTGTATTGGGGTGGTCCTCCGCCTCGTGCTCCTCCTTCGTATTGATTAGTTAGATAGGCG 1315
Query 969 GTGGTTGGTGCGTTCTTTTTGCTGGAATGATTATATTTTCCATTAGGATGGTTAGGCTTT 1028
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1316 GTGGTTGGTGCGTTCTTTTTACTGGAATGATTATATTTTCCATTAGGATGGTTAGGCTTT 1375
Query 1029 TGTT 1032
||||
Sbjct 1376 TGTT 1379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50585786029
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5