BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg938506 Length=1040 Score E Sequences producing significant alignments: (Bits) Value AT3G55640.1 | Symbols: | Mitochondrial substrate carrier famil... 1688 0.0 > AT3G55640.1 | Symbols: | Mitochondrial substrate carrier family protein | chr3:20639833-20642659 FORWARD LENGTH=1462 Length=1462 Score = 1688 bits (914), Expect = 0.0 Identities = 999/1041 (96%), Gaps = 1/1041 (0%) Strand=Plus/Plus Query 1 TTTGGATTTTTGGGCGGC-AAAATGGTGATGCAGACGGAGGCTAGGGTTGGTGTGAGCTC 59 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 194 TTTGGATTTTTGGGCGGCAAAAATGGTGATGCAGACGGAAGCTAGGGTTGGTGTGAGCTC 253 Query 60 AGGGCATGACGTAGCTTCGTCTTCTCATCGTTTAACGCAGGACCAGAGATCACATATCGA 119 ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 254 AGGACATGGCGTAGCTTCGTCTTCTCATCGTTTAACGCAGGACCAGAGATCACATATCGA 313 Query 120 ATCGGCTTCTCAGCTCTTAGCCGGAGGACTCGCCGGTGCTTTCAGCAAGACTTGCACTGC 179 |||||| || ||||||||||||||||||||||| |||||||| ||||||||||| ||||| Sbjct 314 ATCGGCGTCGCAGCTCTTAGCCGGAGGACTCGCTGGTGCTTTTAGCAAGACTTGTACTGC 373 Query 180 TCCTCTCTCTCGTCTCACCATTCTCTTCCAGGTGCAAGGTATGCACACAAATGCTGAAGC 239 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 374 TCCTCTATCTCGTCTCACCATTCTCTTCCAGGTGCAAGGTATGCACACAAATGCTGCAGC 433 Query 240 TCTAAGAAAGCCAAGCATATTACACGAGGCGTCACGGATATTGAATGAAGAAGGATTGAA 299 | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 434 TTTAAGAAAGCCAAGCATATTACACGAGGCTTCACGGATATTGAATGAAGAAGGATTGAA 493 Query 300 GGCTTTTTGGAAAGGGAATCTAGTTACTATTGCTCACCGGCTTCCATATTCTTCTGTCAA 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 494 AGCTTTTTGGAAAGGGAATCTAGTTACTATTGCTCACCGGCTTCCATATTCTTCTGTTAA 553 Query 360 TTTCTGCGCATATGAACACTACAAGAAGTTCATGTATATGGTTACTGGGATGGAAAATCA 419 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 554 TTTCTACGCATATGAACACTACAAGAAGTTCATGTATATGGTTACTGGGATGGAAAATCA 613 Query 420 CAAGGCGAGTATAAGCTCAAACGTTTTTGTACATTTTGTAGCCGGTGGTTTGGCTGGAAT 479 ||||| | ||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 614 CAAGGAGGGTATAAGTTCAAACCTTTTTGTACATTTTGTAGCCGGTGGTTTGGCTGGAAT 673 Query 480 CACAGCTGCTTCTGCCACTTATCCGCTTGATCTTGTTAGAACTCGTCTTGCTGCTCAGAC 539 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 674 CACAGCTGCTTCTGCCACTTATCCACTTGATCTTGTTAGAACTCGTCTTGCTGCTCAGAC 733 Query 540 AAAAGTAATCTACTACACGGGTATCTGGCATACTCTGCGCACTATTACTAGAGATGAAGG 599 |||||||||||||||| ||||||||||||||||||||||| ||||||| | |||||||| Sbjct 734 AAAAGTAATCTACTACTCGGGTATCTGGCATACTCTGCGCTCTATTACAACCGATGAAGG 793 Query 600 TATCTTGGGCCTCTACAAGGGACTAGGAACAACGCTTGTGGGTGTTGGGCCTAGTATTGC 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 794 TATCTTGGGCCTCTACAAGGGACTAGGAACAACGCTTGTGGGTGTTGGGCCTAGTATTGC 853 Query 660 CATTAGCTTTTCTGTGTATGAATCATTGAGATCTTATTGGAGGTCAACTAGGCCCCATGA 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 854 CATTAGCTTTTCTGTGTATGAATCATTGAGATCTTATTGGAGGTCAACTAGGCCCCATGA 913 Query 720 TTCCCCTGTCATGGTCAGTCTAGCTTGTGGAAGTCTTTCAGGAATAGCATCTTCAACAGC 779 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 914 TTCCCCTATCATGGTCAGTCTAGCTTGTGGAAGTCTTTCAGGAATAGCATCTTCAACAGC 973 Query 780 TACGTTTCCATTGGATCTGGTGAGAAGAAGGAAGCAGCTAGAAGGAATAGGCGGGCGAGC 839 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 974 TACGTTTCCATTGGATCTGGTGAGAAGAAGGAAGCAGCTGGAAGGAATAGGCGGGCGAGC 1033 Query 840 GGTAGTGTACAAGACAGGATTGTTAGGCACATTAAAGCGTATAGTTCAGACGGAAGGAGC 899 |||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1034 GGTAGTGTACAAGACAGGTTTGTTAGGCACATTAAAGCGTATTGTTCAAACGGAAGGAGC 1093 Query 900 AAGAGGTTTGTACAGAGGAATTCTTCCAGAGTACTACAAAGTGGTACCTGGTGTTGGGAT 959 ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1094 GAGAGGCCTGTACAGAGGAATTCTTCCAGAGTACTACAAAGTGGTACCTGGTGTAGGGAT 1153 Query 960 TTGCTTCATGACCTACGAGACACTCAAGCTTTACTTCAAAGATCTTTCCTCAAAGCTATA 1019 ||||||||||||||||||||||||||||||||||||||| |||||||| || || ||||| Sbjct 1154 TTGCTTCATGACCTACGAGACACTCAAGCTTTACTTCAAGGATCTTTCTTCGAATCTATA 1213 Query 1020 ACGGTTTAAACTGTTGATAGA 1040 |||||||||| |||| |||| Sbjct 1214 ACGGTTTAAAAGGTTGGTAGA 1234 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50987659205 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5