BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg938584 Length=559 Score E Sequences producing significant alignments: (Bits) Value AT3G56290.1 | Symbols: | unknown protein; Has 39 Blast hits to... 817 0.0 > AT3G56290.1 | Symbols: | unknown protein; Has 39 Blast hits to 39 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20878539-20879568 REVERSE LENGTH=753 Length=753 Score = 817 bits (442), Expect = 0.0 Identities = 524/562 (93%), Gaps = 12/562 (2%) Strand=Plus/Plus Query 7 GTGAAAATCACAAGATGGGTCTTAGAGCACTGCCAATTCAACACAACAGTGGATTCCTCT 66 ||||||| || ||||||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 14 GTGAAAACCATAAGATGGGTTTTAGAGCACTGCCTCTTCAACACAGCAGTGGGTTCATCT 73 Query 67 CTACGACCAAAGT-CCCGATCTCAAGAACCTCGCCGA-GATTTAGCCGGAACCCTAGATG 124 | ||||||||||| || ||||||||||||||||| | ||||| ||||||||||||||| Sbjct 74 CCACGACCAAAGTATCC-ATCTCAAGAACCTCGCCCAGGATTT-TCCGGAACCCTAGATG 131 Query 125 GGTCGTTGTCTCAGCAAAGCAAGAGAAAGAT---GATGAGAAGAAGAAGGAAGAGGAGAC 181 ||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||| Sbjct 132 GGTCGTTGTCTCAGCAAAGCAAGAGAAAGATGAGGATAAGAAGAAGAATGAAGAGGAGAC 191 Query 182 TTCGTTGTTTACGAAATTAACTGATGCGTTGGACTTCTCACAAGTTCGGTCGGAGAAAGA 241 |||||||||||| ||||||| ||||| |||||||||||||||||||| ||||||||||| Sbjct 192 TTCGTTGTTTACTCAATTAACGGATGCCTTGGACTTCTCACAAGTTCGATCGGAGAAAGA 251 Query 242 CGCTGAGCTTCTCTACGAGGCTCGAGAAGCCACCAAATCTGGTGGCAAGATGACCCAAGA 301 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 252 CGCTGAGCTTCTCTACGAGGCTCGAGAAGCCACCAAATCTGGTCGCAAGATGACCCAAGA 311 Query 302 ACAGTATGGGGCATTGAGGAGAAAAATCGGAGGGACGTACAAGGACTTCTTTAAATCCTA 361 ||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| Sbjct 312 ACAGTATGGGGCATTGAGGAGAAAAATCGGAGGAACATACAAGGACTTTTTTAAATCCTA 371 Query 362 CGTTGAAGTGGATGGGAAATATGTGGAAGAAGGG-TGGGTGGACAAAACATGTAAGATAT 420 |||||||||||||||| ||||||||| || |||| ||||||||||||||||||||||||| Sbjct 372 CGTTGAAGTGGATGGGCAATATGTGG-AGGAGGGATGGGTGGACAAAACATGTAAGATAT 430 Query 421 GCAAAAAGGACACAAAGGGTGAGGCAAGACAAGTGGACAAGTTAGGGAGATATGCTCATG 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 431 GCAAAAAGGACACAAAGGGTGAGGCAAGACAAGTGGACAAGTTAGGGAGATATGCTCATG 490 Query 481 TCTCTTGTCTTCAAAATCCTCCCTCTGGAAATTTCTTCACCAGGCTCTTCTCTAGATGAT 540 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 491 TCTCTTGTCTTCAAAATCCTCCCTCTGGAAATTTCTTCACCAGACTCTTCTCTAGATGAT 550 Query 541 GAT---CAATTTCCCAAATCAT 559 ||| |||||||||||||||| Sbjct 551 GATGATCAATTTCCCAAATCAT 572 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26825034498 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5