BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938584

Length=559
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G56290.1 | Symbols:  | unknown protein; Has 39 Blast hits to...   817    0.0  


> AT3G56290.1 | Symbols:  | unknown protein; Has 39 Blast hits 
to 39 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:20878539-20879568 REVERSE 
LENGTH=753
Length=753

 Score =  817 bits (442),  Expect = 0.0
 Identities = 524/562 (93%), Gaps = 12/562 (2%)
 Strand=Plus/Plus

Query  7    GTGAAAATCACAAGATGGGTCTTAGAGCACTGCCAATTCAACACAACAGTGGATTCCTCT  66
            ||||||| || ||||||||| |||||||||||||  ||||||||| |||||| ||| |||
Sbjct  14   GTGAAAACCATAAGATGGGTTTTAGAGCACTGCCTCTTCAACACAGCAGTGGGTTCATCT  73

Query  67   CTACGACCAAAGT-CCCGATCTCAAGAACCTCGCCGA-GATTTAGCCGGAACCCTAGATG  124
            | |||||||||||  || ||||||||||||||||| | |||||  |||||||||||||||
Sbjct  74   CCACGACCAAAGTATCC-ATCTCAAGAACCTCGCCCAGGATTT-TCCGGAACCCTAGATG  131

Query  125  GGTCGTTGTCTCAGCAAAGCAAGAGAAAGAT---GATGAGAAGAAGAAGGAAGAGGAGAC  181
            |||||||||||||||||||||||||||||||   ||| |||||||||| |||||||||||
Sbjct  132  GGTCGTTGTCTCAGCAAAGCAAGAGAAAGATGAGGATAAGAAGAAGAATGAAGAGGAGAC  191

Query  182  TTCGTTGTTTACGAAATTAACTGATGCGTTGGACTTCTCACAAGTTCGGTCGGAGAAAGA  241
            ||||||||||||  ||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct  192  TTCGTTGTTTACTCAATTAACGGATGCCTTGGACTTCTCACAAGTTCGATCGGAGAAAGA  251

Query  242  CGCTGAGCTTCTCTACGAGGCTCGAGAAGCCACCAAATCTGGTGGCAAGATGACCCAAGA  301
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  252  CGCTGAGCTTCTCTACGAGGCTCGAGAAGCCACCAAATCTGGTCGCAAGATGACCCAAGA  311

Query  302  ACAGTATGGGGCATTGAGGAGAAAAATCGGAGGGACGTACAAGGACTTCTTTAAATCCTA  361
            ||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct  312  ACAGTATGGGGCATTGAGGAGAAAAATCGGAGGAACATACAAGGACTTTTTTAAATCCTA  371

Query  362  CGTTGAAGTGGATGGGAAATATGTGGAAGAAGGG-TGGGTGGACAAAACATGTAAGATAT  420
            |||||||||||||||| ||||||||| || |||| |||||||||||||||||||||||||
Sbjct  372  CGTTGAAGTGGATGGGCAATATGTGG-AGGAGGGATGGGTGGACAAAACATGTAAGATAT  430

Query  421  GCAAAAAGGACACAAAGGGTGAGGCAAGACAAGTGGACAAGTTAGGGAGATATGCTCATG  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  431  GCAAAAAGGACACAAAGGGTGAGGCAAGACAAGTGGACAAGTTAGGGAGATATGCTCATG  490

Query  481  TCTCTTGTCTTCAAAATCCTCCCTCTGGAAATTTCTTCACCAGGCTCTTCTCTAGATGAT  540
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  491  TCTCTTGTCTTCAAAATCCTCCCTCTGGAAATTTCTTCACCAGACTCTTCTCTAGATGAT  550

Query  541  GAT---CAATTTCCCAAATCAT  559
            |||   ||||||||||||||||
Sbjct  551  GATGATCAATTTCCCAAATCAT  572



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26825034498


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5