BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938591
Length=746
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56360.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1110 0.0
> AT3G56360.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G05250.1);
Has 45 Blast hits to 45 proteins in 13 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20896481-20897593
FORWARD LENGTH=1113
Length=1113
Score = 1110 bits (601), Expect = 0.0
Identities = 683/724 (94%), Gaps = 0/724 (0%)
Strand=Plus/Plus
Query 1 TTGAATCTTCCGGTAGTCGGGGATGGCGGCGTCTGCGAGGATTTGTTGCGGAGGAGGAAG 60
|||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||
Sbjct 139 TTGAATCTTCCGGTAGGCGAAGATGGCGACGTCTGCGAGGATTTGTTGCGGAGGAGGAAG 198
Query 61 TGCATGTGCCGTTCGTTGTGATCGTCGTACGTTGAATTTGAATTCTCGATCGTCGTGTGT 120
|||||| |||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 199 TGCATGCGCCGTTCGTTGTGATCGTCGCACGTTAAATTTGAATTCTCGATCGTCATGTGT 258
Query 121 TGTCCCGGTGACGAATCGACGGAATCGGTGTGAGATCGGGAAGGTTTCGATGTCGATGGA 180
||| || |||||||||||||||||| ||||| |||||||||| ||||||||||||||||
Sbjct 259 TGTTCCAGTGACGAATCGACGGAATATGTGTGCGATCGGGAAGATTTCGATGTCGATGGA 318
Query 181 TGATTTGACACCACCGTCTGCGGCGGTGAAGATTGAAAGGATCGGTGAAAGGAAACGTGG 240
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 319 GGATTTGTCACCACCGTCTGCGGCGGTGAAGATTGAAAGGATCGGTGGAAGGAAACGCGG 378
Query 241 TGGATCTGTTGTGTCGAGGGAGAAGCTTGATGTGTGGTTGAGAGATTCGGTGGTTGAGAT 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 379 TGGATCTGTTGTGTCGAGGGAGAAGCTAGATGTGTGGTTGAGAGATTCGGTGGTTGAGAT 438
Query 301 CGTGAAGAATCTTCGAGAATCTCCGTTATTGATGCATTTATACGCGGAGGCTAATGGTGG 360
||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 439 CGTGAAGAATCTTAGAGAGTCGCCGTTATTGATGCATTTATACGCGGAGGCTAATGGTGG 498
Query 361 TTTGACGACGTCGGCAACGAATCCTGAGGCGGAGGATTGGCCGGAGATGGAGGGAAAGTG 420
|||||||||| ||||||||||||| |||||||||||||| | |||||||| ||||||||
Sbjct 499 TTTGACGACGACGGCAACGAATCCAAAGGCGGAGGATTGGACAGAGATGGAAGGAAAGTG 558
Query 421 GGATAGAGGAGAAGAGAGGACGCCGGAAGGAGTTATATTCGTGGAGAAGCTCTCTGACGG 480
|| |||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct 559 GGGTAGAGGAGAAGAGAGGACGCCGGAAGGAGTTATATTGGTGGAGAAGCTCGCAGACGG 618
Query 481 TGATGTAGCGGATGATGATGATCACGATGGTGGCGCGTGTGGAGAAGATACGAGCGCGTG 540
||| |||| |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 619 TGACATAGCAGATGATGATGATCACGATGGTGGCGCGTGTGGGGAAGATACAAGCGCGTG 678
Query 541 GGGGATTGTGGCGCAAGGAAGAGGAACGGATAGTGGGCCGGTTTGTTATCTATTGAAAAC 600
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 679 GGGGATTGTGGCGCAAGGAAGAGGATCGGATACTGGGCCGGTTTGTTATCTATTGAAAAC 738
Query 601 GACCCGGGTCGGGTCGGGTATGGGTACGGTTTGCACCCATTTCTGTTTGGTTAAGGTCAA 660
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 GACCCGGGTCCGGTCGGGTATGGGTACGGTTTGCACCCATTTCTGTTTGGTTAAGGTCAA 798
Query 661 GAGTTTTAGGGAAACGGCTATGTCACAGTTGAATAATTCATGGTTGGTGCAGACTGGTCA 720
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 799 GAGTTTTAGGGAAACGGCTATGTCACAGTTGAATAATTCGTGGTTGGTGCAGACTGGTCA 858
Query 721 ATGA 724
||||
Sbjct 859 ATGA 862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36218819987
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5