BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938626
Length=832
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56650.1 | Symbols: | Mog1/PsbP/DUF1795-like photosystem II... 1264 0.0
> AT3G56650.1 | Symbols: | Mog1/PsbP/DUF1795-like photosystem
II reaction center PsbP family protein | chr3:20984752-20986131
FORWARD LENGTH=1062
Length=1062
Score = 1264 bits (684), Expect = 0.0
Identities = 780/827 (94%), Gaps = 4/827 (0%)
Strand=Plus/Plus
Query 1 CTTTGTATTCCGACaaaaaaaaTGGCGACTGCATCTCTAGTTCTGACATCTAAAGTCTTC 60
|||||||||||||| ||||||||||||||||| |||||||||| |||||||||| |||||
Sbjct 36 CTTTGTATTCCGAC-AAAAAAATGGCGACTGCGTCTCTAGTTCCGACATCTAAAATCTTC 94
Query 61 TCTGTCTCTTCGAAATGCTCAGCTTTGATTAAAGCAAGGA-CTGGCGTAGTTGTTGCATC 119
||||||||| |||||| |||||||| |||||||||||||| | | ||||||||||||||
Sbjct 95 TCTGTCTCTCCGAAATCCTCAGCTTCGATTAAAGCAAGGAGC-AGAGTAGTTGTTGCATC 153
Query 120 GGCGCAACAGCAACAACAGCCAAGAAGGAGAGAGCTGCTGCTGAAATCGGCGGTTGCGAT 179
| ||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 154 GTCGCAACAACAACAACAACCAAGAAGGAGAGAGCTTCTGCTGAAATCGGCGGTGGCGAT 213
Query 180 TCCGGCGATTCTGCAATTGAATGAAGCTCCGAAATCGGAGGCGCGTGAAGTGGAAGTTGG 239
||||||||||||||||||||| |||||||||| ||| | ||||||||| |||||||||||
Sbjct 214 TCCGGCGATTCTGCAATTGAAGGAAGCTCCGATATCAGCGGCGCGTGAGGTGGAAGTTGG 273
Query 240 ATCATACTTACCTCCGTCGCCGTCTGATCCTTCCTTCGTCCTCTTCAAAGCCAAACCTTC 299
||| |||||||||| ||| |||||||||||||| |||||||| || ||||||||||||||
Sbjct 274 ATCGTACTTACCTCTGTCTCCGTCTGATCCTTCTTTCGTCCTGTTTAAAGCCAAACCTTC 333
Query 300 CGATACTCCTGCTCTCCGCGCAGGAAATGTTCAGCCCTATCAGTTTGTTCTACCGCCGAA 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 AGATACTCCTGCTCTCCGCGCAGGAAATGTTCAGCCCTATCAGTTTGTTCTACCGCCGAA 393
Query 360 TTGGAAACAGTTGCGAATAGCCAACATTTTGTCAGGTAATTACTGTCAACCGAAATGCGC 419
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 394 TTGGAAACAGTTGCGAATAGCCAATATTTTGTCAGGTAATTACTGTCAACCGAAATGTGC 453
Query 420 AGAGCCATGGATCGAAGTGAAGTTTGAGAACGAGAAGCAAGGCAAGGTTCAAGTGGTTGC 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 454 AGAGCCATGGATCGAAGTGAAGTTTGAGAACGAGAAGCAAGGCAAGGTTCAAGTAGTTGC 513
Query 480 ATCTCCTTTGATCCGCTTAACTAACAAACCAAATGCAACCATTGAGGATATCGGTGAGCC 539
||||||||| ||||||||||| ||||||||||||||||| ||||| ||| ||||||||||
Sbjct 514 ATCTCCTTTAATCCGCTTAACCAACAAACCAAATGCAACTATTGAAGATCTCGGTGAGCC 573
Query 540 TGAGAAAGTGATTGCTTCTCTTGGTCCCTTTGTCACCGGAAACTCTTATGACTCTGATGA 599
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 574 TGAGAAAGTGATTGCTTCTCTTGGTCCTTTTGTCACCGGAAACTCTTATGACTCTGATGA 633
Query 600 ACTTTTGAAGACTTCAATCGAAAAGATTGGAGATCAAACGTACTATAAGTATGTGTTGGA 659
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 634 ACTTTTGAAGACTTCAATCGAAAAAATTGGAGATCAAACGTACTATAAGTATGTGTTGGA 693
Query 660 GACGCCATTTGCGCTCACGGGAAGTCACAATCTTGCAAAAGCGACAGCAAAGGGAAACAC 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 694 GACGCCATTTGCGCTCACGGGAAGTCACAATCTTGCAAAAGCGACAGCAAAGGGAAGCAC 753
Query 720 AGTGGTTCTGTTTGTTGTGAGTGCTACTGAAAAGCAATGGCAGAGCTCACAGAAGACTCT 779
|| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 754 GGTTGTTTTGTTTGTTGTAAGTGCTACTGAAAAGCAATGGCAGAGCTCACAGAAGACTCT 813
Query 780 TGAAGCCATTCTTGATTCTTTTCAACTGTAAATCCTGAATTATTGTT 826
|||||||||||||||||||||||||||||||||| || || |||||
Sbjct 814 TGAAGCCATTCTTGATTCTTTTCAACTGTAAATCA-GAGTTTTTGTT 859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40538956629
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5