BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938748
Length=1216
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57650.1 | Symbols: LPAT2 | lysophosphatidyl acyltransferase... 1958 0.0
> AT3G57650.1 | Symbols: LPAT2 | lysophosphatidyl acyltransferase
2 | chr3:21349507-21353174 FORWARD LENGTH=1749
Length=1749
Score = 1958 bits (1060), Expect = 0.0
Identities = 1151/1195 (96%), Gaps = 6/1195 (1%)
Strand=Plus/Plus
Query 21 ATGGTGCTTGCTGCAGCTGTCATCGTGCCTTTGGGCATTCTCTTCTTCATATCTGGTCTC 80
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 245 ATGGTGATTGCTGCAGCTGTCATCGTGCCTTTGGGCCTTCTCTTCTTCATATCTGGTCTC 304
Query 81 GTTGTCAATCTCTTTCAGGCAGTTTGCTATGTACTCATTCGGCCACTGTCTAAGAACACA 140
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 305 GCTGTCAATCTCTTTCAGGCAGTTTGCTATGTACTCATTCGACCACTGTCTAAGAACACA 364
Query 141 TACAGAAAAATTAACCGGGTGGTTGCAGAAACCTTGTGGTTGGAGCTTGTATGGATAGTT 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 TACAGAAAAATTAACCGGGTGGTTGCAGAAACCTTGTGGTTGGAGCTTGTATGGATAGTT 424
Query 201 GACTGGTGGGCTGGAGTTAAGATCCAAGTGTTTGCTGATAATGAGACCTTCAATCGAATG 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 GACTGGTGGGCTGGAGTTAAGATCCAAGTGTTTGCTGATAATGAGACCTTCAATCGAATG 484
Query 261 GGCAAAGAACACGCTCTTGTCGTATGTAATCACCGAAGTGATATTGATTGGCTTGTGGGA 320
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 485 GGCAAAGAACATGCTCTTGTCGTTTGTAATCACCGAAGTGATATTGATTGGCTTGTGGGA 544
Query 321 TGGGTTCTGGCTCAGCGGTCAGGTTGCCTGGGAAGCGCATTAGCTGTAATGAAGAAGTCT 380
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TGGATTCTGGCTCAGCGGTCAGGTTGCCTGGGAAGCGCATTAGCTGTAATGAAGAAGTCT 604
Query 381 TCCAAATTCCTTCCAGTCATAGGCTGGTCAATGTGGTTCTCGGAGTATCTGTTTCTGGAA 440
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 605 TCCAAATTCCTTCCAGTCATAGGCTGGTCAATGTGGTTCTCGGAGTATCTCTTTCTGGAA 664
Query 441 AGGAATTGGGCCAAGGATGAAAGCACTCTAAAGTCAGGTCTTCAGCGCTTGAGTGACTTC 500
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 665 AGAAATTGGGCCAAGGATGAAAGCACTCTAAAGTCAGGTCTTCAGCGCTTGAGCGACTTC 724
Query 501 CCTCGACCTTTCTGGTTAGCCCTTTTTGTGGAGGGAACTCGATTTACAGAGGCTAAACTT 560
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 725 CCTCGACCTTTCTGGTTAGCCCTTTTTGTGGAGGGAACTCGCTTTACAGAAGCCAAACTT 784
Query 561 AAAGCCGCACAAGAGTATGCAGCATCCTCTGAATTGCCTATCCCTCGAAATGTGTTGATT 620
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 785 AAAGCCGCACAAGAGTATGCAGCCTCCTCTGAATTGCCTATCCCTCGAAATGTGTTGATT 844
Query 621 CCTCGCACCAAAGGTTTTGTGTCAGCTGTTAGTAATATGCGCTCGTTTGTCCCAGCCATT 680
||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||
Sbjct 845 CCTCGCACCAAAGGTTTCGTGTCAGCTGTTAGTAATATGCGTTCATTTGTCCCAGCAATT 904
Query 681 TATGATATGACAGTGACTATTCCAAAAACTTCTCCACCACCCACGATGCTAAGACTATTC 740
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 905 TATGATATGACAGTGACTATTCCAAAAACCTCTCCACCACCCACGATGCTAAGACTATTC 964
Query 741 AAAGGACAACCTTCTGTGGTGCATGTTCACATCAAGTGTCACTCAATGAAAGACTTGCCT 800
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 965 AAAGGACAACCTTCAGTGGTGCATGTTCACATCAAGTGTCACTCGATGAAAGACTTACCT 1024
Query 801 GAATCAGATGACGCAATTGCACAGTGGTGCAGAGATCAGTTTGTGGCTAAGGATGCTCTG 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 GAATCAGATGACGCAATTGCACAGTGGTGCAGAGATCAGTTTGTGGCTAAGGATGCTCTG 1084
Query 861 TTAGACAAACACATAGCTGCAGACACTTTCCCCGGTCAACAAGAACAGAACATTGGCCGT 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 TTAGACAAACACATAGCTGCAGACACTTTCCCCGGTCAACAAGAACAGAACATTGGCCGT 1144
Query 921 CCCATAAAGTCCCTTGCAGTGGTTCTATCATGGGCATGCGTACTAACTCTTGGAGCAATA 980
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 CCCATAAAGTCCCTTGCGGTGGTTCTATCATGGGCATGCGTACTAACTCTTGGAGCAATA 1204
Query 981 AAGTTCCTACACTGGGCACAACTCTTTTCCTCATGGAAAGGTATCACGCTATCGGCGGTC 1040
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
Sbjct 1205 AAGTTCCTACACTGGGCACAACTCTTTTCTTCATGGAAAGGTATCACGATATCGGCGCTT 1264
Query 1041 GGTCTAGGTATCATCACTCTATGTATGCAGATCCTGATACGCTCGTCTCAGTCAGAGCGT 1100
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1265 GGTCTAGGTATCATCACTCTCTGTATGCAGATCCTGATACGCTCGTCTCAGTCAGAGCGT 1324
Query 1101 TCGACCCCAGCTAAAGTTGTTCCAGCCAAGCCAAAAGACCATCACCACTCAGAACCAGAA 1160
||||||||||| ||||| || |||||||||||||||||| |||||||| | | ||||
Sbjct 1325 TCGACCCCAGCCAAAGTCGTCCCAGCCAAGCCAAAAGACAATCACCAC-C----C-AGAA 1378
Query 1161 CCATCCTCCCAAACAGAAATGGAGAAGCAGGAGTAGAAGCTGGTTCTCACAGATC 1215
|||||||||||||||||| ||||||| || |||| || ||||||||||||||||
Sbjct 1379 TCATCCTCCCAAACAGAAACGGAGAAGGAGAAGTAAAAACTGGTTCTCACAGATC 1433
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59738648550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5