BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg938754 Length=1070 Score E Sequences producing significant alignments: (Bits) Value AT3G57710.1 | Symbols: | Protein kinase superfamily protein | ... 1522 0.0 AT3G57700.1 | Symbols: | Protein kinase superfamily protein | ... 1511 0.0 AT3G57770.1 | Symbols: | Protein kinase superfamily protein | ... 558 3e-158 AT3G57765.1 | Symbols: U2.3 | U2.3; snRNA | chr3:21397262-21398... 409 3e-113 > AT3G57710.1 | Symbols: | Protein kinase superfamily protein | chr3:21384676-21387399 REVERSE LENGTH=2724 Length=2724 Score = 1522 bits (824), Expect = 0.0 Identities = 963/1030 (93%), Gaps = 10/1030 (1%) Strand=Plus/Minus Query 16 TTAGAGATGTTGCGTCTGTTCagaaagaagaagaagaagaagcagaagaaagaaaagGAG 75 ||||||||||||||||||||| || | |||||||||||||||||||||||| ||||| Sbjct 2489 TTAGAGATGTTGCGTCTGTTC----AG-A-AAGAAGAAGAAGCAGAAGAAAGAAGAGGAG 2436 Query 76 ATCAATTTCCAGAAGAATGGGAGCTTATTGTTGGAAGAACTCATTGCAACTTCAGGAGGT 135 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2435 ATCAATCTCCAGAAGAATGGGAGCTTACTGTTGGAAGAACTCATTGCAACTTCAGGAGGT 2376 Query 136 AAATACAATCCCATCCGTACGTTTTCTTCCGACCAAATCCTTCAAGCCACAAATCACTTT 195 | ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 2375 ATATACAATCCCATCCGTACGTTTTCTTCCGACCAAATCCTACAAGCTACAAATCACTTT 2316 Query 196 GACTGGAACTACGTAATCTCTGAAGACAGATTCGTGTGGTACAAAGGTATGATTGAAAAC 255 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2315 GACTGGAACTACGTAATCTCTGAAGACAGATTCGTGTGGTACAAAGGCATGATTGAAAAC 2256 Query 256 AGACTCGTACTGATCAAGAAATTCCAAGACTGTTCTGTTTTCGACGCTGACAACTTTTAC 315 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2255 AGACCCGTACTGATCAAGAAATTCCAAGACTGTTCTGTTTTCGACGCTGACAACTTTTAC 2196 Query 316 CGTGACATTGCGGTTTCATCTTTGATGAGTAGCCATAAGAATGTTCTCAAGCTTC-TAGG 374 ||||||||||| |||||||||||||||||||||||||||||||||||||||| || | || Sbjct 2195 CGTGACATTGCTGTTTCATCTTTGATGAGTAGCCATAAGAATGTTCTCAAGC-TCTTGGG 2137 Query 375 GTGTTGTCTAGAGTTTCCTCGTCCTGTTCTCGTGTGTGAGTACCCAGAAAATGGAGCTCT 434 |||||||||||||||||||||||| |||||||||||||| || |||||| |||||||||| Sbjct 2136 GTGTTGTCTAGAGTTTCCTCGTCCGGTTCTCGTGTGTGAATATCCAGAACATGGAGCTCT 2077 Query 435 AAACTGTATAAGACGTGGAAAAGAAGGCGTCCGGCCATTCCCTTGGAATGTAAGGTTGAG 494 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 2076 AAACTGTATAAGATGTGGAAAAGAAGGCGTCCGGTCATTCCCTTGGAATGTAAGGTTGAG 2017 Query 495 AATCGCCAAGGAGATTGCAGATGCTGTAACGTATCTGCATACTGAATTCCCTAGGACTAT 554 |||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||| Sbjct 2016 AATCGCCAAGGAGATTGCAGATGCTGTAGCGTATCTTCATACTGAATTCCCCAGGACTAT 1957 Query 555 AATCCATAGGGATTTAAAGCTTGCAAATATTTTCCTGGACGAGAATTGGTCCGTC-AAGC 613 |||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||| Sbjct 1956 AATCCATAGGGATTTAAAGCTTGCAAATATTTTCCTTGACGAGAATTGGTCCG-CTAAGC 1898 Query 614 TCTCTTCTTTCAGCCTCAGTGTACTGATTCCAGAAGGAGAAACGGGCGTAAATGACATGG 673 |||||||||||||||||||| || || ||||||| || ||||| |||||||||||||||| Sbjct 1897 TCTCTTCTTTCAGCCTCAGTATAGTGCTTCCAGAGGGTGAAACTGGCGTAAATGACATGG 1838 Query 674 TTTGCAAGACATCGAGCTATATCGAGCCCGGTTACCTCAATACAGGTTTGGTCACTGAGA 733 |||||| |||||| |||||||||||||| | |||| | ||||||||||||||||| |||| Sbjct 1837 TTTGCAGGACATCAAGCTATATCGAGCCTGATTACTTTAATACAGGTTTGGTCACCGAGA 1778 Query 734 ATGTCGATATCTATAACCTTGGGATCATCATGCTAGTTCTTTTGAGAGAAAAGTCTGAAT 793 ||||||| ||||||| |||||||||||||||||| || |||||| || ||||||||||| Sbjct 1777 ATGTCGACATCTATAGTCTTGGGATCATCATGCTAATTATTTTGACAGGAAAGTCTGAAT 1718 Query 794 ACACTTCCGAAGTTGCTGTTTATCTTCCTGCATTGCCTGTCTATGTTGGGAAGTTTCTGG 853 ||| ||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1717 ACAATTCAGAAGTCGCTGTTTATCTTCCTGTATTGCCTGTCTATGTTGGGAAGTTTCTGG 1658 Query 854 AGCGAGGTTTGTTGACTGAGCTGATAGACCCGTTGATGTTGGACAGCGCGAGTGACGACA 913 ||||||||||||||||||| || |||||||||| ||| ||||||||| ||||||| |||| Sbjct 1657 AGCGAGGTTTGTTGACTGAACTCATAGACCCGTCGATATTGGACAGCACGAGTGATGACA 1598 Query 914 TTCCCCAGCATTCAAGACTGCAAATGGAAGCGTTCATTGAGCTTGCTTTTAGATGTGTAA 973 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1597 TTCCCAAGCATTCAAGACTGCAAATGGAAGCGTTCATTGAGCTTGCTTTTAGATGTGTAA 1538 Query 974 GATTCAGACCAGGAGAGAACGTGCCTCGTATGATAGACATCGCAAAAGAACTCAAGAAGA 1033 |||||||||||||||||||||||||||| ||||||||| | |||||||| || ||||||| Sbjct 1537 GATTCAGACCAGGAGAGAACGTGCCTCGCATGATAGACGTTGCAAAAGAGCTTAAGAAGA 1478 Query 1034 TAGAAAAACA 1043 |||| ||||| Sbjct 1477 TAGAGAAACA 1468 > AT3G57700.1 | Symbols: | Protein kinase superfamily protein | chr3:21384917-21385939 FORWARD LENGTH=1023 Length=1023 Score = 1511 bits (818), Expect = 0.0 Identities = 957/1024 (93%), Gaps = 10/1024 (1%) Strand=Plus/Plus Query 22 ATGTTGCGTCTGTTCagaaagaagaagaagaagaagcagaagaaagaaaagGAGATCAAT 81 ||||||||||||||| || | |||||||||||||||||||||||| ||||||||||| Sbjct 1 ATGTTGCGTCTGTTC----AG-A-AAGAAGAAGAAGCAGAAGAAAGAAGAGGAGATCAAT 54 Query 82 TTCCAGAAGAATGGGAGCTTATTGTTGGAAGAACTCATTGCAACTTCAGGAGGTAAATAC 141 |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 55 CTCCAGAAGAATGGGAGCTTACTGTTGGAAGAACTCATTGCAACTTCAGGAGGTATATAC 114 Query 142 AATCCCATCCGTACGTTTTCTTCCGACCAAATCCTTCAAGCCACAAATCACTTTGACTGG 201 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 115 AATCCCATCCGTACGTTTTCTTCCGACCAAATCCTACAAGCTACAAATCACTTTGACTGG 174 Query 202 AACTACGTAATCTCTGAAGACAGATTCGTGTGGTACAAAGGTATGATTGAAAACAGACTC 261 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 175 AACTACGTAATCTCTGAAGACAGATTCGTGTGGTACAAAGGCATGATTGAAAACAGACCC 234 Query 262 GTACTGATCAAGAAATTCCAAGACTGTTCTGTTTTCGACGCTGACAACTTTTACCGTGAC 321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 235 GTACTGATCAAGAAATTCCAAGACTGTTCTGTTTTCGACGCTGACAACTTTTACCGTGAC 294 Query 322 ATTGCGGTTTCATCTTTGATGAGTAGCCATAAGAATGTTCTCAAGCTTC-TAGGGTGTTG 380 ||||| |||||||||||||||||||||||||||||||||||||||| || | |||||||| Sbjct 295 ATTGCTGTTTCATCTTTGATGAGTAGCCATAAGAATGTTCTCAAGC-TCTTGGGGTGTTG 353 Query 381 TCTAGAGTTTCCTCGTCCTGTTCTCGTGTGTGAGTACCCAGAAAATGGAGCTCTAAACTG 440 |||||||||||||||||| |||||||||||||| || |||||| |||||||||||||||| Sbjct 354 TCTAGAGTTTCCTCGTCCGGTTCTCGTGTGTGAATATCCAGAACATGGAGCTCTAAACTG 413 Query 441 TATAAGACGTGGAAAAGAAGGCGTCCGGCCATTCCCTTGGAATGTAAGGTTGAGAATCGC 500 ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 414 TATAAGATGTGGAAAAGAAGGCGTCCGGTCATTCCCTTGGAATGTAAGGTTGAGAATCGC 473 Query 501 CAAGGAGATTGCAGATGCTGTAACGTATCTGCATACTGAATTCCCTAGGACTATAATCCA 560 |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||| Sbjct 474 CAAGGAGATTGCAGATGCTGTAGCGTATCTTCATACTGAATTCCCCAGGACTATAATCCA 533 Query 561 TAGGGATTTAAAGCTTGCAAATATTTTCCTGGACGAGAATTGGTCCGTC-AAGCTCTCTT 619 |||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||| Sbjct 534 TAGGGATTTAAAGCTTGCAAATATTTTCCTTGACGAGAATTGGTCCG-CTAAGCTCTCTT 592 Query 620 CTTTCAGCCTCAGTGTACTGATTCCAGAAGGAGAAACGGGCGTAAATGACATGGTTTGCA 679 |||||||||||||| || || ||||||| || ||||| |||||||||||||||||||||| Sbjct 593 CTTTCAGCCTCAGTATAGTGCTTCCAGAGGGTGAAACTGGCGTAAATGACATGGTTTGCA 652 Query 680 AGACATCGAGCTATATCGAGCCCGGTTACCTCAATACAGGTTTGGTCACTGAGAATGTCG 739 |||||| |||||||||||||| | |||| | ||||||||||||||||| |||||||||| Sbjct 653 GGACATCAAGCTATATCGAGCCTGATTACTTTAATACAGGTTTGGTCACCGAGAATGTCG 712 Query 740 ATATCTATAACCTTGGGATCATCATGCTAGTTCTTTTGAGAGAAAAGTCTGAATACACTT 799 | ||||||| |||||||||||||||||| || |||||| || |||||||||||||| || Sbjct 713 ACATCTATAGTCTTGGGATCATCATGCTAATTATTTTGACAGGAAAGTCTGAATACAATT 772 Query 800 CCGAAGTTGCTGTTTATCTTCCTGCATTGCCTGTCTATGTTGGGAAGTTTCTGGAGCGAG 859 | ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 773 CAGAAGTCGCTGTTTATCTTCCTGTATTGCCTGTCTATGTTGGGAAGTTTCTGGAGCGAG 832 Query 860 GTTTGTTGACTGAGCTGATAGACCCGTTGATGTTGGACAGCGCGAGTGACGACATTCCCC 919 ||||||||||||| || |||||||||| ||| ||||||||| ||||||| ||||||||| Sbjct 833 GTTTGTTGACTGAACTCATAGACCCGTCGATATTGGACAGCACGAGTGATGACATTCCCA 892 Query 920 AGCATTCAAGACTGCAAATGGAAGCGTTCATTGAGCTTGCTTTTAGATGTGTAAGATTCA 979 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 893 AGCATTCAAGACTGCAAATGGAAGCGTTCATTGAGCTTGCTTTTAGATGTGTAAGATTCA 952 Query 980 GACCAGGAGAGAACGTGCCTCGTATGATAGACATCGCAAAAGAACTCAAGAAGATAGAAA 1039 |||||||||||||||||||||| ||||||||| | |||||||| || ||||||||||| | Sbjct 953 GACCAGGAGAGAACGTGCCTCGCATGATAGACGTTGCAAAAGAGCTTAAGAAGATAGAGA 1012 Query 1040 AACA 1043 |||| Sbjct 1013 AACA 1016 > AT3G57770.1 | Symbols: | Protein kinase superfamily protein | chr3:21397542-21398853 FORWARD LENGTH=1242 Length=1242 Score = 558 bits (302), Expect = 3e-158 Identities = 491/579 (85%), Gaps = 25/579 (4%) Strand=Plus/Plus Query 114 ACTCATTGCAACTTCAGGAGGTAAATACAATCCCATCCGTACGTTTTCTTC-CGACCAAA 172 |||||||||| | |||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 159 ACTCATTGCATCGTCAGGAGGTAAATACAATCCCATCCGTACGTTTTCTTCTC-ACCAAA 217 Query 173 TCCTTCAAGCCACAAATC-ACTTTGACTGGAACTACGTAATCTCTGAAGACAGATTCGTG 231 ||||| |||| ||||| | |||| ||||||| ||| | |||| || ||||||||||||| Sbjct 218 TCCTTGAAGCTACAAA-CAACTTCGACTGGAGCTATGCAATCGGTGTAGACAGATTCGTG 276 Query 232 TGGTACAAAGGTATGATTGAAAACAGA-CTCGTACTGATCAAGAAAT-TCCAA---G-AC 285 ||||||||||||| ||||||||||||| | ||| ||||||||| | | | || | || Sbjct 277 TGGTACAAAGGTACGATTGAAAACAGAGC-CGTGCTGATCAAGTACTAT-AAAGGTGAAC 334 Query 286 TGTTCT-GTTTTCGACGCTGACAACTTTTACCGTGACATTGCGGTTTCATCTTTGATGAG 344 || | ||| ||| ||||||||||||||||||| |||||||||||||| ||||||| Sbjct 335 CCTT-TAACTTT-GACCCTGACAACTTTTACCGTGATATTGCGGTTTCATCGATGATGAG 392 Query 345 TAGCCATAAGAATGTTCTCAAGCTTC-TAGGGTGTTGTCTAGAGTTTCCTCGTCCTGTTC 403 |||||||||||||||||||||| || | |||||||||||||||||||||||||| |||| Sbjct 393 CAGCCATAAGAATGTTCTCAAGC-TCTTGGGGTGTTGTCTAGAGTTTCCTCGTCCGGTTC 451 Query 404 TCGTGTGTGAGTACCCAGAAAATGGAGCTCTAAACTGTATAAGACGTGGAAAAGAAGG-C 462 |||||||||| ||||||||||| |||||||| || |||| || || | | ||| Sbjct 452 TCGTGTGTGAATACCCAGAAAAGGGAGCTCTTGCCTATATAGGAGGT-GCGGGGGAGGTA 510 Query 463 GTCCGGCCATTCCCTTGGAATGTAAGGTTG-AGAATCGCCAAGGAGATTGCAGATGCTGT 521 || |||||| |||||| |||||| ||| || ||||| |||||||||||||||||||| Sbjct 511 ATCAAGCCATTGGCTTGGAGTGTAAGATTGAAG-ATCGCTAAGGAGATTGCAGATGCTGT 569 Query 522 AACGTATCTGCATACTGAATTCCCTAGGACTATAATCCATAGGGATTTAAAGCTTGCAAA 581 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 570 AACGTATCTGCATACTGAATTCCCTAGGACTATAATCCATAGGGATTTAAAGCTTACAAA 629 Query 582 TATTTTCCTGGACGAGAATTGGTCCG-TCAAGCTCTCTTCTTTCAGCCTCAGTGTACTGA 640 ||||||| |||||||||||||| ||| | ||||||||||||||||||||||| ||| | Sbjct 630 TATTTTCTTGGACGAGAATTGGACCGCT-AAGCTCTCTTCTTTCAGCCTCAGCATACCAA 688 Query 641 TTCCAGAAGGAGAAACGGGCGTA-AATGACATGGTTTGC 678 ||||||| ||||| ||| ||| || || || |||||| Sbjct 689 TTCCAGAGGGAGAGTTGGGGGTAGAA-GATATCGTTTGC 726 > AT3G57765.1 | Symbols: U2.3 | U2.3; snRNA | chr3:21397262-21398132 REVERSE LENGTH=871 Length=871 Score = 409 bits (221), Expect = 3e-113 Identities = 373/443 (84%), Gaps = 23/443 (5%) Strand=Plus/Minus Query 114 ACTCATTGCAACTTCAGGAGGTAAATACAATCCCATCCGTACGTTTTCTTC-CGACCAAA 172 |||||||||| | |||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 433 ACTCATTGCATCGTCAGGAGGTAAATACAATCCCATCCGTACGTTTTCTTCTC-ACCAAA 375 Query 173 TCCTTCAAGCCACAAATCA-CTTTGACTGGAACTACGTAATCTCTGAAGACAGATTCGTG 231 ||||| |||| ||||| || ||| ||||||| ||| | |||| || ||||||||||||| Sbjct 374 TCCTTGAAGCTACAAA-CAACTTCGACTGGAGCTATGCAATCGGTGTAGACAGATTCGTG 316 Query 232 TGGTACAAAGGTATGATTGAAAACAGA-CTCGTACTGATCAAGAAAT-TCCAAGACTGTT 289 ||||||||||||| ||||||||||||| | ||| ||||||||| | | | ||| || Sbjct 315 TGGTACAAAGGTACGATTGAAAACAGAGC-CGTGCTGATCAAGTACTATA-AAGG-TGAA 259 Query 290 C--TGT---TTTCGACGCTGACAACTTTTACCGTGACATTGCGGTTTCATCTTTGATGAG 344 | | | ||| ||| ||||||||||||||||||| |||||||||||||| ||||||| Sbjct 258 CCCTTTAACTTT-GACCCTGACAACTTTTACCGTGATATTGCGGTTTCATCGATGATGAG 200 Query 345 TAGCCATAAGAATGTTCTCAAGCTTCTAGGG-TGTTGTCTAGAGTTTCCTCGTCCTGTTC 403 ||||||||||||||||||||||| || ||| ||||||||||||||||||||||| |||| Sbjct 199 CAGCCATAAGAATGTTCTCAAGCT-CTTGGGGTGTTGTCTAGAGTTTCCTCGTCCGGTTC 141 Query 404 TCGTGTGTGAGTACCCAGAAAATGGAGCTCTAAACTGTATAAGACGTG-GAAAAGAAGGC 462 |||||||||| ||||||||||| |||||||| || |||| || ||| | || || Sbjct 140 TCGTGTGTGAATACCCAGAAAAGGGAGCTCTTGCCTATATAGGAGGTGCGGGG-GA-GGT 83 Query 463 G-TCCGGCCATTCCCTTGGAATGTAAGGTTGA-GAATCGCCAAGGAGATTGCAGATGCTG 520 || |||||| |||||| |||||| |||| || |||| ||||||||||||||||||| Sbjct 82 AATCAAGCCATTGGCTTGGAGTGTAAGATTGAAGA-TCGCTAAGGAGATTGCAGATGCTG 24 Query 521 TAACGTATCTGCATACTGAATTC 543 ||||||||||||||||||||||| Sbjct 23 TAACGTATCTGCATACTGAATTC 1 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52409368980 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5