BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg938862 Length=580 Score E Sequences producing significant alignments: (Bits) Value AT3G58680.1 | Symbols: MBF1B, ATMBF1B | multiprotein bridging f... 881 0.0 > AT3G58680.1 | Symbols: MBF1B, ATMBF1B | multiprotein bridging factor 1B | chr3:21707276-21708911 FORWARD LENGTH=806 Length=806 Score = 881 bits (477), Expect = 0.0 Identities = 546/579 (94%), Gaps = 5/579 (1%) Strand=Plus/Plus Query 1 TAGAAAGCGA-TTGAATAAAGAAAAATCTA-AAGAGAAGCCATGGCAGGATTTGGACCGA 58 |||||| | | ||||| |||| |||||| | ||||||||||||||| ||| ||||||||| Sbjct 54 TAGAAAAC-AGTTGAAGAAAG-AAAATC-ACAAGAGAAGCCATGGCCGGAATTGGACCGA 110 Query 59 TTACTCAGGATTGGGAACCAGTTGTGATCCGTAAGAAAGCTCCTAACTCTGCCGCTAAGC 118 ||||||||||||||||||||||||||||||| |||| |||||||||| |||| ||||||| Sbjct 111 TTACTCAGGATTGGGAACCAGTTGTGATCCGCAAGAGAGCTCCTAACGCTGCAGCTAAGC 170 Query 119 GCGACGAGAAGACTGTCAACGCCGCTCGTCGAAGCGGCGCCGATATTGAGACCGTTCGCA 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 171 GCGACGAGAAGACTGTCAACGCCGCTCGTCGAAGCGGCGCCGATATTGAGACCGTTCGAA 230 Query 179 AATTCAATGCTGGATCGAACAAGGCTGCATCAAGCGGCACCTCCTTGAACACAAAGAAGC 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 231 AATTCAATGCTGGATCGAACAAGGCTGCATCAAGCGGCACCTCCTTGAACACAAAGAAGC 290 Query 239 TAGATGATGACACTGAGAACTTATCTCATGATCGTGTACCCACTGAGTTGAAGAAAGCCA 298 |||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 291 TAGATGATGATACTGAGAACTTATCTCATGATCGTGTGCCCACTGAATTGAAGAAAGCCA 350 Query 299 TCATGCAAGCCAGAGGGGAGAAGAAGCTGACTCAGTCGCAGCTTGCCCAACTGATCAATG 358 |||||||||| |||||||||||||||||||||||||| || |||||||| |||||||||| Sbjct 351 TCATGCAAGCTAGAGGGGAGAAGAAGCTGACTCAGTCCCAACTTGCCCATCTGATCAATG 410 Query 359 AGAAGCCACAAGTGATCCAAGAATACGAGTCAGGTAAAGCAATTCCGAATCAACAGATCC 418 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 411 AGAAGCCACAAGTGATCCAAGAATACGAGTCTGGGAAAGCAATTCCGAATCAACAGATCC 470 Query 419 TCTCTAAGCTGGAGAGGGCACTTGGTGCTAAACTACGTGGAAAGAAGTAGAAGTGTAGAA 478 | || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 471 TTTCAAAGCTGGAGAGGGCACTTGGTGCTAAACTCCGTGGAAAGAAGTAGAAGTGTAGAA 530 Query 479 CAAAGCTCTTGAAGGTAAAAACAAAAGCTAATCTCAGTTTCTCTTCAGTCCAGATGCTTT 538 |||||||||| ||||||| |||||||||| ||| |||||||||| ||||||| ||||||| Sbjct 531 CAAAGCTCTTAAAGGTAACAACAAAAGCTGATCGCAGTTTCTCTCCAGTCCACATGCTTT 590 Query 539 ACCATATCCTAGAAACTATATCTATGTATGGTTTGGTTT 577 ||||||||||| ||||||||||||||||||||||||||| Sbjct 591 ACCATATCCTAAAAACTATATCTATGTATGGTTTGGTTT 629 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27879951585 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5