BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg938876 Length=1657 Score E Sequences producing significant alignments: (Bits) Value AT3G58790.1 | Symbols: GAUT15 | galacturonosyltransferase 15 | ... 2662 0.0 AT3G58795.1 | Symbols: | other RNA | chr3:21745707-21746545 FO... 324 2e-87 AT3G58780.3 | Symbols: SHP1 | K-box region and MADS-box transcr... 147 5e-34 > AT3G58790.1 | Symbols: GAUT15 | galacturonosyltransferase 15 | chr3:21742071-21746324 REVERSE LENGTH=2359 Length=2359 Score = 2662 bits (1441), Expect = 0.0 Identities = 1590/1663 (96%), Gaps = 6/1663 (0%) Strand=Plus/Plus Query 1 GTTAGGGAAACTGTGAAGAAATGAAGTTTTACATATCGGCGACGGGGATTAAGAAGGTTA 60 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 333 GTTAGGGAAACTGTGAAGAAATGAAGTTTTACATATCAGCGACGGGGATTAAGAAGGTTA 392 Query 61 CCATATCAAATCCCGGCGTCGGAATCGGAAAAGGAAGCGGAGGATGCGCGGCTGCAGCGG 120 | |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 393 CGATATCAAATCCCGGCGTCGGAATCGGTAAAGGAAGCGGAGGATGTGCGGCTGCAGCGG 452 Query 121 CGGCGTTAGCAGCGCGGAGATTCTCTGGTCGGACGTTGTTACTGTTGCTGCTGCTGCTCG 180 |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| Sbjct 453 CGGCGTTAGCAGCGCGGAGATTCTCTAGTCGCACGTTGTTACTGTTGCTGCTGCTGCTCG 512 Query 181 CCATCGTCCTCCCTTTTATCTTCGTCAGATTCGCGTTTCTCGTCCTCGAATCCGCCTCCG 240 | |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 513 CTATCGTCCTCCCTTTTATCTTCGTCAGGTTCGCGTTTCTCGTCCTCGAATCTGCCTCCG 572 Query 241 TTTGCGATTCACCACTCGATTGCATGGGACTGAGACTTTTCCGTGGGGGCGACACATCTC 300 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 573 TTTGCGATTCACCACTCGATTGCATGGGACTCAGACTTTTCCGTGGGGGCGACACATCTC 632 Query 301 TGAAAATTCGGGAAGAGTTGACACGAGCTCTAGTGG-A-AGA-GACAG---ATCAGGACT 354 |||||||| |||||||||||||||| |||||||||| | ||| ||||| |||||||| Sbjct 633 TGAAAATTGGGGAAGAGTTGACACGGGCTCTAGTGGAAGAGACGACAGATCATCAGGACG 692 Query 355 TTAATGGAAGAGGaaaaaaaGGATCATTGGAGTCATTCGACGACCTTGTCAAGGAGATGA 414 ||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||| Sbjct 693 TTAATGGAAGAGGAACGAAGGGATCATTGGAGTCATTCGACGACCTTGTTAAGGAGATGA 752 Query 415 CGTTAAAACGCCGTGATATAAGGGCGTTTGCTTCCGTAACTAAGAAGATGCTGTTGCAGA 474 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 753 CGTTAAAACGCCGTGACATAAGGGCGTTTGCTTCCGTGACTAAGAAGATGCTGTTGCAGA 812 Query 475 TGGAGCGTAAAGTCCAATCAGCGAAACATCATGAGTTAGTGTACTGGCATTTAGCCTCTC 534 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 813 TGGAACGTAAAGTCCAATCAGCGAAACATCATGAGTTAGTGTACTGGCATTTAGCCTCTC 872 Query 535 ACGGTATTCCCAAAAGCCTTCATTGCCTTTCCCTCAGATTAACTGAAGAGTACTCGGTAA 594 |||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 873 ACGGTATTCCTAAAAGCCTCCATTGCCTTTCCCTCAGATTAACTGAAGAGTACTCTGTAA 932 Query 595 ATGCAATGGCTCGAATGCGTTTGCCTCCGCCTGAATCCGTCTCTCGTTTGACCGACCCAT 654 |||||||||||||||||||||||||||||||||| ||||| || ||| |||||||||||| Sbjct 933 ATGCAATGGCTCGAATGCGTTTGCCTCCGCCTGAGTCCGTATCACGTCTGACCGACCCAT 992 Query 655 CTTTTCACCATATTGTCATCTTGACCGACAATGTCCTGGCTGCCTCTGTCGTCATATCTT 714 ||||||| ||||||||| || |||| ||||||||||| |||||||||||||||||||| | Sbjct 993 CTTTTCATCATATTGTCCTCCTGACTGACAATGTCCTTGCTGCCTCTGTCGTCATATCGT 1052 Query 715 CTACTGTACAGAACGCTGTGAATCCCGAGAAGTTCGTCTTTCATATTGTTACCGATaaaa 774 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 1053 CTACTGTACAAAACGCTGTGAATCCCGAGAAGTTTGTCTTTCATATTGTTACCGATAAGA 1112 Query 775 aaaCCTATACCCCTATGCACGCTTGGTTTGCTATCAACTCTGCTTTATCGCCAGTTGTCG 834 ||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||| | Sbjct 1113 AAACCTATACCCCTATGCATGCTTGGTTTGCTATCAACTCTGCTTCATCACCAGTTGTTG 1172 Query 835 AAGTAAAGGGACTTCATCAGTATGATTGGCCTCGAGAAGTGAATTTCAAAGTTAGAGAGA 894 ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 1173 AAGTAAAGGGACTTCATCAGTATGATTGGCCTCAAGAAGTGAACTTCAAAGTTAGAGAGA 1232 Query 895 TGCTGGACATTCACCGCTTGATTTGGAGACGGCATTATCAAAATTTGAAAGACTCTGATT 954 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 1233 TGCTGGACATTCACCGCTTAATTTGGAGACGACATTATCAAAATTTGAAAGACTCTGATT 1292 Query 955 TTAGTTTTGTTGAGGGTACTCATGAGCAGTCCTTGCAAGCTCTAAATCCTAGCTGCCTCG 1014 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1293 TTAGTTTTGTTGAGGGTACTCATGAGCAGTCCTTGCAAGCTCTAAATCCTAGCTGCCTTG 1352 Query 1015 CCCTTTTGAATCATCTTCGCATCTACGTTCCCAAGCTTTTTCCAGATCTCAACAAGATAG 1074 |||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 1353 CCCTTTTGAACCATCTTCGCATTTACATTCCCAAGCTTTTTCCAGATCTCAACAAGATAG 1412 Query 1075 TGTTGTTGGATGATGATGTAGTAGTACAGAGCGATCTTTCATCTTTATGGGAAACGGATC 1134 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1413 TGTTGTTGGATGATGATGTAGTAGTACAGAGCGATCTTTCGTCTTTATGGGAAACGGATC 1472 Query 1135 TCAATGGTAAAGTTGCTGGTGCTGTCGTTGATTCGTGGTGCGGAAACAACTGTTGCCCGG 1194 |||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||| | Sbjct 1473 TCAACGGTAAAGTTGTTGGTGCTGTCGTTGATTCGTGGTGCGGAGACAACTGTTGCCCCG 1532 Query 1195 GAAGAAAATACAAAGACTATTTCAACTTCTCACATCCTCTGATCTCATCAAACTTAGTTC 1254 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1533 GAAGAAAATACAAAGACTATTTCAACTTCTCACATCCTTTGATCTCATCAAACTTAGTTC 1592 Query 1255 AAGAAGACTGTGCTTGGCTTTCTGGTATGAATGTCTTTGATCTCAAAGCCTGGAGACAAA 1314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1593 AAGAAGACTGTGCTTGGCTTTCTGGTATGAATGTCTTTGATCTCAAAGCCTGGAGACAAA 1652 Query 1315 CCAATATCACAGAAGCTTACTCTACATGGTTAAGACTCAGTGTTAGTTCAGGACTACAAT 1374 ||||||| || |||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 1653 CCAATATTACTGAAGCTTACTCTACATGGCTAAGACTCAGTGTTAGGTCAGGACTACAAT 1712 Query 1375 TATGGCAACCAGGAGCTTTACCACCGACATTACTTGCTTTCAAAGGACTCATACAGTATC 1434 ||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 1713 TATGGCAACCAGGGGCTTTACCACCGACATTACTTGCTTTCAAAGGACTTACACAGTCTC 1772 Query 1435 TTGAACCATCATGGCACGTCGCTGGACTAGGTTCTCGATCCATAAAATGCCCTCAAGAGA 1494 ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| Sbjct 1773 TTGAACCATCATGGCACGTCGCTGGACTAGGTTCTCGATCCGTAAAATCCCCTCAAGAGA 1832 Query 1495 TTCTGAAATCTGCTGCGGTTTTACATTTCAGCGGTCCAGCAAAACCGTGGCTAGAGATCA 1554 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1833 TTCTGAAATCTGCTTCGGTTTTACATTTCAGCGGTCCAGCAAAACCGTGGCTAGAGATCA 1892 Query 1555 GTAACCCTGAGGTACGATCTATTTGGTATAGATACGTAAATTCCTCCGACATCTTCGTTA 1614 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1893 GTAACCCTGAGGTACGATCTCTTTGGTATAGATACGTAAATTCCTCCGACATCTTCGTTA 1952 Query 1615 GAAAATGCAAAATCATGAACTGAGATTAAAAAACAGATTAGAA 1657 ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1953 GAAAATGCAAAATCATGAACTGAGACTAAAAAACAGATTAGAA 1995 > AT3G58795.1 | Symbols: | other RNA | chr3:21745707-21746545 FORWARD LENGTH=715 Length=715 Score = 324 bits (175), Expect = 2e-87 Identities = 189/196 (96%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 63 ATATCAAATCCCGGCGTCGGAATCGGAAAAGGAAGCGGAGGATGCGCGGCTGCAGCGGCG 122 |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 224 ATATCAAATCCCGGCGTCGGAATCGGTAAAGGAAGCGGAGGATGTGCGGCTGCAGCGGCG 165 Query 123 GCGTTAGCAGCGCGGAGATTCTCTGGTCGGACGTTGTTACTGTTGCTGCTGCTGCTCGCC 182 |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 164 GCGTTAGCAGCGCGGAGATTCTCTAGTCGCACGTTGTTACTGTTGCTGCTGCTGCTCGCT 105 Query 183 ATCGTCCTCCCTTTTATCTTCGTCAGATTCGCGTTTCTCGTCCTCGAATCCGCCTCCGTT 242 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 104 ATCGTCCTCCCTTTTATCTTCGTCAGGTTCGCGTTTCTCGTCCTCGAATCTGCCTCCGTT 45 Query 243 TGCGATTCACCACTCG 258 |||||||||||||||| Sbjct 44 TGCGATTCACCACTCG 29 > AT3G58780.3 | Symbols: SHP1 | K-box region and MADS-box transcription factor family protein | chr3:21738460-21742517 FORWARD LENGTH=1894 Length=1894 Score = 147 bits (79), Expect = 5e-34 Identities = 81/82 (99%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 1576 TTTGGTATAGATACGTAAATTCCTCCGACATCTTCGTTAGAAAATGCAAAATCATGAACT 1635 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1893 TTTGGTATAGATACGTAAATTCCTCCGACATCTTCGTTAGAAAATGCAAAATCATGAACT 1834 Query 1636 GAGATTAAAAAACAGATTAGAA 1657 |||| ||||||||||||||||| Sbjct 1833 GAGACTAAAAAACAGATTAGAA 1812 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81877088895 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5