BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938917
Length=1360
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59060.2 | Symbols: PIL6, PIF5 | phytochrome interacting fac... 1999 0.0
> AT3G59060.2 | Symbols: PIL6, PIF5 | phytochrome interacting factor
3-like 6 | chr3:21827978-21830507 REVERSE LENGTH=1879
Length=1879
Score = 1999 bits (1082), Expect = 0.0
Identities = 1276/1367 (93%), Gaps = 23/1367 (2%)
Strand=Plus/Plus
Query 13 GATCTGACATGGAACAAGTGTTTGCTGATTGGAATTTTGAAGATAATTTTCACATGTCCA 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 GATCTGACATGGAACAAGTGTTTGCTGATTGGAATTTTGAAGATAATTTTCACATGTCCA 385
Query 73 CTAATAAAAGATCAATCAGACCAGAAGATGAACTAGTGGAGCTACTGTGGAGAGATGGTA 132
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 386 CTAATAAAAGATCAATCAGACCAGAAGATGAATTAGTGGAGCTATTGTGGAGAGATGGTC 445
Query 133 AAGTGGTTTTACAAAGCCAAGGTCGTAGAGAACCGTCAGT-----TC-AAACCCACAAAC 186
||||||||||||||||||||| |||||||||||||||||| || ||||||||||||
Sbjct 446 AAGTGGTTTTACAAAGCCAAGCTCGTAGAGAACCGTCAGTCCAAGTCCAAACCCACAAAC 505
Query 187 AAGAATCCCTAAGAAAACCCAACAACATTTTTCTTGATAACCAAGAAACAGTACAAAAGC 246
||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 506 AAGAAACCCTAAGAAAACCCAACAATATTTTTCTTGACAACCAAGAAACAGTACAAAAGC 565
Query 247 TTAGCAACTCTGTTCTTCAGGATCAAGAAACCGTCTCCTGGAT-CAATTACCCTCCCGAT 305
|| | || ||| ||| | ||||||||||||||||||||||| |||| ||||||| |||
Sbjct 566 CTAACTACGCTGCTCTAGATGATCAAGAAACCGTCTCCTGGATACAAT-ACCCTCCGGAT 624
Query 306 GACGTCATGGACCCTTTTGAATCCGAGTTCTCCTCTCATTTCTTCTCTTCGATCGATCAC 365
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 GACGTCATCGACCCTTTCGAATCCGAGTTCTCCTCTCATTTCTTCTCTTCGATCGATCAC 684
Query 366 GTCC-ACGGTCCAGAGAAACCACGAACGATCGAAGAGACAGTTAAGCATGAGGCTCAAGC 424
|| | ||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 685 CTCGGA-GGTCCTGAGAAGCCACGAACGATCGAAGAGACAGTTAAGCATGAGGCTCAAGC 743
Query 425 CATGGCTCCTCCTAAGTTGCGATCCTCTGTTATAACAGTCGGACCAAGCCATTGCGGTAG 484
|||||||||||||||||| ||||||| ||||||||||||||||| || |||||||| ||
Sbjct 744 CATGGCTCCTCCTAAGTTTAGATCCTCGGTTATAACAGTCGGACCGAGTCATTGCGGCAG 803
Query 485 CAACCAGTCTACCAATATTCATCAAGTGACTACACTTCCGGTATCTATGAGTGATAGAAC 544
||||||||| || ||||||||||| | |||||||||||||| ||||||||||||||||
Sbjct 804 CAACCAGTCAACAAATATTCATCAGGCCACTACACTTCCGGTTTCTATGAGTGATAGAAG 863
Query 545 CAAGAACGTCGAAGAAAGACTTGACACTTCGTCCGGTGGCTCCTCCGGTTGCAGCTACGG 604
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 864 CAAGAACGTCGAAGAAAGACTTGACACTTCGTCAGGTGGCTCCTCCGGTTGCAGCTATGG 923
Query 605 AAGGAACAACAAAGAAACCGTTAGTGGAAGAAGCGTAACCATTGACCGTAAAAGAAAACA 664
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 924 AAGGAACAACAAAGAAACCGTTAGTGGAACAAGTGTAACCATTGACCGTAAAAGAAAACA 983
Query 665 TGTAATGGATGCTGATCAGGAATCTGTGTCTCAATCAGATATAGGTTTGACCTCAACCGA 724
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 984 TGTTATGGATGCTGATCAAGAATCTGTGTCTCAATCAGATATAGGTTTGACCTCAACCGA 1043
Query 725 TGATCAAGCCATGGGTAACAAATCGAGCCAGCGGTCAGGATCTACTCGAAGAAGCCGTGC 784
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1044 TGATCAAACCATGGGTAACAAATCGAGCCAACGGTCAGGATCTACTCGAAGAAGCCGTGC 1103
Query 785 AGCTGAAGTTCATAATCTCTCAGAAAGGAGGAGGAGAGACCGGATCAATGAAAGAATGAA 844
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1104 AGCTGAAGTTCATAATCTCTCAGAAAGGAGGAGGAGAGATCGGATCAATGAAAGAATGAA 1163
Query 845 AGCTCTTCAAGAACTCATACCTCACTGCAGCAAGA-CAGATAAAGCTTCGATATTGGATG 903
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1164 AGCTCTTCAAGAACTCATACCTCACTGCAGCA-GAACAGATAAAGCTTCGATATTGGATG 1222
Query 904 AAGCAATTGATTACTTGAAATCACTTCAAATGCAACTCCAAGTGATGTGGATGGGAAGTG 963
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 AAGCAATTGATTACTTAAAATCACTTCAAATGCAACTCCAAGTGATGTGGATGGGAAGTG 1282
Query 964 GAATGGCGGCAGCGGCTGCAGCAGCAACTACTCCGATGATGTTTCCTGGCGTACAATCAT 1023
|||||||||| ||||| ||||||||| | | ||||||||||||||| || ||||||||||
Sbjct 1283 GAATGGCGGCGGCGGCAGCAGCAGCAGCAAGTCCGATGATGTTTCCCGGGGTACAATCAT 1342
Query 1024 CTCCATACATTAATCAGATGGCTATGCAGAGTCAGATGCAATTGCCTCAATTCCCGGTTA 1083
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1343 CTCCATACATTAATCAGATGGCTATGCAAAGTCAGATGCAATTGTCTCAATTCCCGGTTA 1402
Query 1084 TGAACCGGTCCGCTCCACAGAATAATCCCGGTTTAGTATGCCAAAACCCGGTACAGTTTC 1143
|||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||| |
Sbjct 1403 TGAACCGGTCCGCTCCGCAGAACCATCCCGGTTTAGTATGTCAAAACCCGGTACAGTTGC 1462
Query 1144 AGCTCCAAGCACATAACCAAATCTTATCGGAGCAGCTCGCTAGGTACATGGGCGGGTTTC 1203
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1463 AGCTCCAAGCACAGAACCAAATCTTATCGGAGCAGCTCGCTAGGTACATGGGCGGGATTC 1522
Query 1204 CCCAGATGCCGCCGGCGGCGAA-TCAG--GC---C-GTGCAACAGC--C-AGCAGACATA 1253
|||||||||||||||||| ||| |||| || | |||||||| | | ||| |||||
Sbjct 1523 CCCAGATGCCGCCGGCGG-GAAATCAGATGCAGACCGTGCAACAACAACCAGCGGACATG 1581
Query 1254 TTGGGATTTGGATCTCCGGCGGGACCGCAAAGTCAACTGTCGGCACCGGCGACCACCGAC 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1582 TTGGGATTTGGATCTCCGGCGGGACCGCAAAGTCAACTGTCGGCACCGGCGACCACCGAC 1641
Query 1314 AGTCTTCATATTGGTAAAATAGCCTGACGTGGCATATAATTTTCCTC 1360
||||||||||| |||||||||| ||||| ||||||||| ||||||||
Sbjct 1642 AGTCTTCATATGGGTAAAATAGGCTGACTTGGCATATAGTTTTCCTC 1688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66967527030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5