BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938964

Length=801
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G59470.1 | Symbols:  | Far-red impaired responsive (FAR1) fa...  1384    0.0  


> AT3G59470.1 | Symbols:  | Far-red impaired responsive (FAR1) 
family protein | chr3:21978961-21980544 REVERSE LENGTH=1341
Length=1341

 Score = 1384 bits (749),  Expect = 0.0
 Identities = 783/800 (98%), Gaps = 0/800 (0%)
 Strand=Plus/Plus

Query  1     GATTGATAATGGTGTAGCTGCTGGGATGATGATGGGGATTCCTGTTGAGCTTGAGGTTAC  60
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  423   GATTGATAATGGAGTAGCTGCTGGGATGATGATGGGGATTCCTGTTGAGCTTGAGGTTAC  482

Query  61    CACGGTTGAGAATCATAATGAAATGGGTGAAAGCTCTGGTCAAGCAATGATTGAGCAAGA  120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  483   CACGGTTGAGAATCATAATGAAATGGGTGAAAGCTCTGGTCAAGCAATGATTGAGCAAGA  542

Query  121   TGATGACAACCATAATGAACTCGGTGAAAATTCTGGTGAGCAAGATGAGAAGGTGGATCC  180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  543   TGATGACAACCATAATGAACTCGGTGAAAATTCTGGTGAGCAAGATGAGAAGGTGGATCT  602

Query  181   TGATTCTATTCCTCTGGCAGTTGCAGATATGACAGAGGCTCAAGGGGATGAGCCTTATGT  240
             |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct  603   TGATTCTATTCCTCTGGCTGTTGCAGATATGACAGAGGCTCAAGGAGATGAGCCTTACGT  662

Query  241   TGGCCAGGAGTTCGAATCTGAAGCAGCGGCTCATGGTTTTTATAATGCGTATGCTACTAA  300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  663   TGGCCAGGAGTTCGAATCTGAAGCAGCGGCTCATGGTTTTTATAATGCGTATGCTACTAA  722

Query  301   AGTAGGATTCGTCATCCGTGTTAGTAAACTGTCACGGTCAAGGCATGATGGATCTCCCAT  360
             |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  723   AGTAGGGTTCGTCATCCGTGTTAGTAAACTGTCACGGTCAAGGCATGATGGATCTCCCAT  782

Query  361   AGGCAGGCAACTTGTTTGTAACAAGGAAGGTTACAGGTTGCCTAGCAAACGGGACAAGGT  420
             |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct  783   AGGCAGGCAACTTGTTTGTAACAAGGAAGGTTACAGGTTGCCTAGCAAGCGGGATAAGGT  842

Query  421   TATTAGACAAAGAGCGGAAACAAGGGTTGGATGTAAAGCAATGATCTTGATTAGAAAAGA  480
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  843   TATTAGACAAAGAGCGGAAACAAGGGTTGGATGTAAAGCAATGATCTTGATTAGAAAAGA  902

Query  481   AAATTCTGGTAAATGGGTTATCACAAAGTTTGTCAAGGAGCATAATCACTCTTTGATGCC  540
              || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  903   GAACTCTGGTAAATGGGTTATCACAAAGTTTGTCAAGGAGCACAATCACTCTTTGATGCC  962

Query  541   TGGCAGAGTTCGAAGGGGTTGCATTTATGATCAATATCCGAACGAACACGACAAAATCCA  600
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  963   TGGCAGAGTTCGAAGGGGTTGCATTTATGATCAATATCCGAACGAACACGACAAAATTCA  1022

Query  601   GGAACTGATGCAGCAGCTAGCAGCAGAGAAAAAGAGAGCGGCTACTTACAAAAGGCATCT  660
             |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  1023  GGAACTGATGCAGCAGCTAGCAGCAGAGAAAAAGAGAGCGGCTACTTACAAAAGACATCT  1082

Query  661   GGAGATGCTATTTGAACAGATCGAACAGCATAACGAAAGCCTATCTAAGAGAATCCAACA  720
             |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct  1083  GGAGATGCTATTTGAACAGATCGAACAGCACAACGAAAGCCTTTCTAAGAGAATCCAACA  1142

Query  721   CATAGTAGACAATGTGAGGAATCTGGAACAAAGAGATCATCAACAGAACCAGCAAGTATA  780
             |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct  1143  CATAGTAGACAATGTGAGGAATCTGGAACAGAGAGATCATCAACAGAACCACCAAGTATA  1202

Query  781   GTCTTTTGGTCTCTGGTTTT  800
             ||||||||||||||||||||
Sbjct  1203  GTCTTTTGGTCTCTGGTTTT  1222



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38981698072


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5