BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938964
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59470.1 | Symbols: | Far-red impaired responsive (FAR1) fa... 1384 0.0
> AT3G59470.1 | Symbols: | Far-red impaired responsive (FAR1)
family protein | chr3:21978961-21980544 REVERSE LENGTH=1341
Length=1341
Score = 1384 bits (749), Expect = 0.0
Identities = 783/800 (98%), Gaps = 0/800 (0%)
Strand=Plus/Plus
Query 1 GATTGATAATGGTGTAGCTGCTGGGATGATGATGGGGATTCCTGTTGAGCTTGAGGTTAC 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 GATTGATAATGGAGTAGCTGCTGGGATGATGATGGGGATTCCTGTTGAGCTTGAGGTTAC 482
Query 61 CACGGTTGAGAATCATAATGAAATGGGTGAAAGCTCTGGTCAAGCAATGATTGAGCAAGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 CACGGTTGAGAATCATAATGAAATGGGTGAAAGCTCTGGTCAAGCAATGATTGAGCAAGA 542
Query 121 TGATGACAACCATAATGAACTCGGTGAAAATTCTGGTGAGCAAGATGAGAAGGTGGATCC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 TGATGACAACCATAATGAACTCGGTGAAAATTCTGGTGAGCAAGATGAGAAGGTGGATCT 602
Query 181 TGATTCTATTCCTCTGGCAGTTGCAGATATGACAGAGGCTCAAGGGGATGAGCCTTATGT 240
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 603 TGATTCTATTCCTCTGGCTGTTGCAGATATGACAGAGGCTCAAGGAGATGAGCCTTACGT 662
Query 241 TGGCCAGGAGTTCGAATCTGAAGCAGCGGCTCATGGTTTTTATAATGCGTATGCTACTAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 TGGCCAGGAGTTCGAATCTGAAGCAGCGGCTCATGGTTTTTATAATGCGTATGCTACTAA 722
Query 301 AGTAGGATTCGTCATCCGTGTTAGTAAACTGTCACGGTCAAGGCATGATGGATCTCCCAT 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 AGTAGGGTTCGTCATCCGTGTTAGTAAACTGTCACGGTCAAGGCATGATGGATCTCCCAT 782
Query 361 AGGCAGGCAACTTGTTTGTAACAAGGAAGGTTACAGGTTGCCTAGCAAACGGGACAAGGT 420
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 783 AGGCAGGCAACTTGTTTGTAACAAGGAAGGTTACAGGTTGCCTAGCAAGCGGGATAAGGT 842
Query 421 TATTAGACAAAGAGCGGAAACAAGGGTTGGATGTAAAGCAATGATCTTGATTAGAAAAGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 TATTAGACAAAGAGCGGAAACAAGGGTTGGATGTAAAGCAATGATCTTGATTAGAAAAGA 902
Query 481 AAATTCTGGTAAATGGGTTATCACAAAGTTTGTCAAGGAGCATAATCACTCTTTGATGCC 540
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 903 GAACTCTGGTAAATGGGTTATCACAAAGTTTGTCAAGGAGCACAATCACTCTTTGATGCC 962
Query 541 TGGCAGAGTTCGAAGGGGTTGCATTTATGATCAATATCCGAACGAACACGACAAAATCCA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 963 TGGCAGAGTTCGAAGGGGTTGCATTTATGATCAATATCCGAACGAACACGACAAAATTCA 1022
Query 601 GGAACTGATGCAGCAGCTAGCAGCAGAGAAAAAGAGAGCGGCTACTTACAAAAGGCATCT 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1023 GGAACTGATGCAGCAGCTAGCAGCAGAGAAAAAGAGAGCGGCTACTTACAAAAGACATCT 1082
Query 661 GGAGATGCTATTTGAACAGATCGAACAGCATAACGAAAGCCTATCTAAGAGAATCCAACA 720
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1083 GGAGATGCTATTTGAACAGATCGAACAGCACAACGAAAGCCTTTCTAAGAGAATCCAACA 1142
Query 721 CATAGTAGACAATGTGAGGAATCTGGAACAAAGAGATCATCAACAGAACCAGCAAGTATA 780
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1143 CATAGTAGACAATGTGAGGAATCTGGAACAGAGAGATCATCAACAGAACCACCAAGTATA 1202
Query 781 GTCTTTTGGTCTCTGGTTTT 800
||||||||||||||||||||
Sbjct 1203 GTCTTTTGGTCTCTGGTTTT 1222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38981698072
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5