BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938990
Length=2059
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59660.1 | Symbols: | C2 domain-containing protein / GRAM d... 970 0.0
> AT3G59660.1 | Symbols: | C2 domain-containing protein / GRAM
domain-containing protein | chr3:22034171-22038658 REVERSE
LENGTH=2214
Length=2214
Score = 970 bits (525), Expect = 0.0
Identities = 597/630 (95%), Gaps = 11/630 (2%)
Strand=Plus/Plus
Query 1421 ATCTGCACGGGAGGATAAAAATCTTAATATTGAACCGTGGCATACTGCTGAAGAATATGA 1480
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1476 ATCTGCACGGAAGGATAAAAATCTTAATATTGAGCCGTGGCATACTGCTGAAGAATATGA 1535
Query 1481 TGGTCAAGTTAGAGAGATTAAGTTCAGATCCATTTGTAATAGTCCGATGTGTCCACCAGA 1540
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1536 TGGTCAAGTTAGAGAGATTAAGTTTAGATCCATTTGTAATAGTCCGATGTGTCCACCAGA 1595
Query 1541 CACTCCTGTGACGGAATGGCAGCACGTTGTTCTATCACCAGAGAAGAAAGTGCTGGTTTT 1600
|||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1596 CACTGCTGTGACGGAATGGCAGCATGTTGTTCTATCACCAGATAAGAAAGTGCTGGTTTT 1655
Query 1601 TGAAACTGTGCAACAGCCACATGATGTTCCTTTTGGTTCTTACTTTGAGGTCCACTGTCG 1660
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1656 TGAAACAGTGCAACAGCCACATGATGTTCCTTTTGGTTCTTACTTTGAGGTCCACTGTCG 1715
Query 1661 ATGGCGCTTGGAAGCTAAAGACGAGACTTCATCTGTTATAGATATAAGAGTCGGTGTACA 1720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1716 ATGGCGCTTGGAAGCTAAAGACGAGACTTCATCTGTTATAGATATAAGAGTCGGTGTACA 1775
Query 1721 TTTCAAGAAATGGTGTTTGATGCAATCGAAGATTAAAGCAGGAGCAATTGACGAGTACAA 1780
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1776 TTTCAAGAAATGGTGTTTGATGCAATCGAAGATTAAAGCAGGGGCAATTGACGAGTACAA 1835
Query 1781 GAAAGAAGTGGAAGTGATGCTAGAAGTGGCATTGTCGTATCTCAAGTCACACTCGTCCTC 1840
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1836 GAAAGAAGTGGAAGTGATGCTAGAAGTGGCATTGTCGTATCTCAAGTCACACTCTTCCTC 1895
Query 1841 AAGCAGCCTTGGTGATATAGAAAAGTCTGCTCTATCTATCATCTCCAACACCAGAAAACA 1900
||| |||| |||||||||||| |||||||||||||| ||| || | ||||||||||||||
Sbjct 1896 AAGTAGCCATGGTGATATAGACAAGTCTGCTCTATC-ATC-TC-C-AACACCAGAAAACA 1951
Query 1901 T-ACGCTAAAACCTAATTTGCCAAAATCAAAAAGCTTCTCAAAGTTTCATTCTCCAGCCA 1959
| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1952 TCA-GCTAAAACCTAATTTACCAAAATCAAAAAGCTTCTCAAAGTTTCATTCTCCAGCCA 2010
Query 1960 GCCAATTAAAGATCATCCAGCGTCATTATTCTTCTTCTTTTATCTTATTAAAGTGTATAT 2019
|| |||||| ||||||||| | ||||| |||||||||||||| | | |||||||||||||
Sbjct 2011 GCTAATTAA-GATCATCCACCATCATTTTTCTTCTTCTTTTA-CATGTTAAAGTGTATAT 2068
Query 2020 GTGGAAA-AGGTAACTA-GAACGGATATTT 2047
|||| || || ||| || ||| ||||||||
Sbjct 2069 GTGGTAACAG-TAATTATGAATGGATATTT 2097
Score = 228 bits (123), Expect = 2e-58
Identities = 140/148 (95%), Gaps = 1/148 (1%)
Strand=Plus/Plus
Query 1274 GGAGAGAGCAGAGTCTGCTTTACGTGCTCATAGTAGCTCTGTGAAAGGAGGTGGTAAAGT 1333
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1251 GGAGAGAGCACAGTCTGCTTTGCGTGCTCATAGTAGCTCTGTGAAAGGAGGTGGTAAAGT 1310
Query 1334 ACAGGTCAAAGCTCCTGAAGATACTGCAGCTGTACCTGTAAAGTTTCAGGCTTTCATCAA 1393
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 ACAAGTGAAAGCTCCTGAAGATACTGCAGCTGTACCTGTAAAGTTTCAGGCTTTCATCAA 1370
Query 1394 GGAACAAGTCCTTGTGAACATC-ACAAT 1420
||| |||||||||| |||||| |||||
Sbjct 1371 AGAAGAAGTCCTTGTTAACATCTACAAT 1398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102057707985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5