BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg939042 Length=950 Score E Sequences producing significant alignments: (Bits) Value AT3G60080.1 | Symbols: | RING/U-box superfamily protein | chr3... 1417 0.0 > AT3G60080.1 | Symbols: | RING/U-box superfamily protein | chr3:22187308-22188795 FORWARD LENGTH=1488 Length=1488 Score = 1417 bits (767), Expect = 0.0 Identities = 890/947 (94%), Gaps = 18/947 (2%) Strand=Plus/Plus Query 1 ACCACAACCACCACTTCTCAATGTCGTCTTCCACCACCACAACAACCACCGTCCACGGCG 60 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 308 ACCACCACCACCACTTCTCAATGTCGTCTTCCACCACCACAACAACCACCGTCCACGGCG 367 Query 61 AGCCTGAACGACGAACTTACTGGTGTCATGAATGCGATATGAGTTTA----tcc-ctcct 115 ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 368 AGCCTGAACGACGAACTTACTGGTGTCATGAATGCGATATGAGTTTATCCCTCCTCTCCT 427 Query 116 -ctcc---tcc---tccgattcctctcctcTGTTATGTCCCCAATGCCGTCTCGATTTCC 168 |||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 428 CCTCCGATTCCGATTCCGATTCCTCTCCTCTGTTATGTCCCCAATGCCGTGTCGATTTCC 487 Query 169 TCGAACGTATGGATCACGATTCTTCTTCTTCTAATCTCTTTGACGTTACCATCGGTGATT 228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 488 TCGAACGTATGGATCACGATTCTTCTTCTTCTAATCTCTTTGACGTTACCATCGGTGATT 547 Query 229 TCGAAGAAGATGATGGAGAAAACGATGACGAAGACGATGAAGAAGATTGGTGTTTCGTTG 288 | |||||| | || |||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 548 TTGAAGAACAAGACGGAGAAAACGATGATGAAGACGACGAAGAAGATTGGTGTTTCGTTG 607 Query 289 ATCCAGCGGTTAATTCCGATGATAATTTCCTCCTCGATAGTCCTTACCTTCACCGTCTTC 348 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 608 ATCCAGCTGTTAATTCCGATGATAATTTCCTCCTCGATAGTCCTTACCTTCACCGTCTTC 667 Query 349 TTCGCCATCTCGCTTCCGATAATTCAGGATCGtcttcttcttcctcctcttcatcttctt 408 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 668 TTCGTCATCTCGCTTCCGATAATTCAGGATCGTCTTCTTCTTCCTCGTCTTCATCTTCTT 727 Query 409 cttcGTTGTTGAAATCTTCAGATATCGATTCGATTCCCACGATTCAGATCTCGTCTTCTA 468 ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 728 CTTCGTTATTGAAATCTTCAGATATCGATTCGATCCCCACGATTCAGATCTCGTCTTCTT 787 Query 469 TGCTCTGTTCCACCGATGATTCAGATCCAGATTCCGTTTTACTCTGCGCCGTATGCAAAG 528 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 788 TGCTCTGTTCCACCGATGATTCAGATCCAGATTCCGTTTTACTCTGCGCCGTTTGCAAAG 847 Query 529 AGGATTTCGTCGTCGGAGAATCTGCTCGGAGATTACCTTGTAGCCATATATACCACTCCG 588 |||||||| || ||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 848 AGGATTTCATCATCGGAGAATCTGCTCGGAGATTACCGTGTAGTCATATATACCACTCCG 907 Query 589 ATTGCATCGTTCCTTGGCTATCGGATCACAACTCGTGTCCGCTTTGCCGATTTGAGCTAC 648 |||||||||| |||||||| |||||||| ||||||||||||||||| |||||||||| | Sbjct 908 ATTGCATCGTCCCTTGGCTCTCGGATCATAACTCGTGTCCGCTTTGTAGATTTGAGCTCC 967 Query 649 CTACGACGGCGAAGGTGGGAATTGGTGGTTCAGAGGCTGAGATGAGAATCCGATTATCGG 708 |||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| Sbjct 968 CTACGACGGCGAAGGTGGGAATCGGTGGCTCAGAGGCTGAGATGAGAATCAGATTATCGG 1027 Query 709 ATCTGGCTACGATTGCTGCAGACGGAGATGATGTGGAAGACGATTGGCTTGGAATAAGAA 768 |||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct 1028 ATCTGGCTACGATTGCTGCAGATGGTGATGATGTGGAAGATGATTGGCTTGGAATCAGAA 1087 Query 769 ACGCGTTGAGAAGACTGGCTCGTCGTCATGAGCAGATGAGATTGGGAGTGGGAGAGATGG 828 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1088 ACGCGTTGAGAAGACTGGCTCGTCGTCATGAGCAGATGAGATTGGGAGTGGGAGAGATGG 1147 Query 829 AGAGGAATTTGGCTCGGACTGTTTCAGGTCTTGGAATTGGTTTGAGGAGA-G-GA-GAGA 885 |||||||||||||| |||||||||||||||||||||||||| |||| ||| | || |||| Sbjct 1148 AGAGGAATTTGGCTAGGACTGTTTCAGGTCTTGGAATTGGTATGAGAAGAAGAGAAGAGA 1207 Query 886 TTGAATCAGAGAGAAGAAGCAACGCCACAACGACGCCGTTGTAAGAA 932 ||||| |||| ||||| ||||| |||||||||||| ||||||||| Sbjct 1208 TTGAAGCAGACAGAAG---CAACGTCACAACGACGCCTTTGTAAGAA 1251 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46466585975 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5