BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939173
Length=1277
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61320.1 | Symbols: | Bestrophin-like protein | chr3:226939... 2054 0.0
> AT3G61320.1 | Symbols: | Bestrophin-like protein | chr3:22693909-22695754
FORWARD LENGTH=1606
Length=1606
Score = 2054 bits (1112), Expect = 0.0
Identities = 1224/1279 (96%), Gaps = 4/1279 (0%)
Strand=Plus/Plus
Query 1 TAAAACCCCTAATTTTCCCGCCAATGTATCAGTCCATGAATCTATCCGTTTCTTCCAATT 60
|||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 71 TAAAACCCCTTATTTTCCCGCCAATGTATCAATCCATGAATCTATCAGTTTCTTCCAATT 130
Query 61 TCGCTCACCGATCTCTCCTCGAGTCACGATTCCCTATATTCTCCACCGGATTCCGTAAAC 120
|| |||||||||| |||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 131 TCACTCACCGATCACTCCTCGAATCACGATTTCCTATATTCTCCACCGGATTCCGCAAAT 190
Query 121 CCGTCAATCTCAAACCTCCCCGCGTGTCATCCGGTCCTGAATCCGGCGATTCCGGTCACG 180
|||||||||||||||||||||| || ||||| |||||||||||| |||||| |||||||
Sbjct 191 CCGTCAATCTCAAACCTCCCCGTGTCTCATCTGGTCCTGAATCCAACGATTCAGGTCACG 250
Query 181 AAACCCTAACCGAGAAGCTTAT--ATTGCTCCTCAGAGCTGTTCCAGATTGGGCAGACGA 238
||||| ||||||| |||||||| | | ||||||||||||||||||||||||||||||||
Sbjct 251 AAACCTTAACCGATAAGCTTATCCA-T-CTCCTCAGAGCTGTTCCAGATTGGGCAGACGA 308
Query 239 GATTAAAGAGCGTGGGATGCAGCAGAAACGCTCTCTCTACACACACGAGAAATGGGTCGA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 309 GATTAAAGAGCGTGGGATGCAGCAGAAACGCTCTCTCTACACACACGAGAAATGGGTTGA 368
Query 299 ACACAGAAGCTCTCTTCGCCATGTGCGTCATCTACTCTCGAGCTTTTCTTCACGAGTTAT 358
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 ACATAGAAGCTCTCTTCGCCATGTGCGTCATCTACTCTCGAGCTTTTCTTCACGAGTTAT 428
Query 359 ACTCTCTTTGATTCCACCTGTTTTCTTCTTCACAAGCGTCGCGGTTGTGATCGCCAGTTA 418
|||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 429 ACTCTCCCTGATTCCACCTGTTTTCTTCTTCACAAGCGTCGCGGTTGTGATCGCTAGCTA 488
Query 419 CAATTCCGCCGTGGCTTTGGATTGGCTTCCTGGTATCTTCCCAATTCTTCGATCTTCGTC 478
||| |||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 489 CAACTCCGCCGTGGCTTTGGATTGGCTTCCTGGTATTTTTCCAATTCTTCGATCCTCGTC 548
Query 479 GTTGCCGTATCAGCTCACGGCTCCGGCTTTGGCTCTTCTTCTGGTGTTTCGTACGGAGGC 538
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 549 GTTGCCGTATCAGCTCACAGCTCCGGCTTTGGCTCTTCTTCTGGTCTTTCGTACGGAGGC 608
Query 539 TTCTTATTCTAGGTATGAGGAAGGAAGGAAAGCTTGGGTTGGGATAATTGCTGGAACTAA 598
||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 609 TTCGTATTCTAGGTATGAAGAAGGAAGGAAAGCTTGGGTTGGGATTATTGCTGGAACTAA 668
Query 599 TGATTTAGCTAGGCAAGTGATTTGTTCCGTTGATAGCTCCGGTGATGAATTGATTATCAA 658
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 669 TGATTTAGCTAGGCAAGTTATTTGTTCCGTTGATAGCTCCGGTGATGAATTGATCATCAA 728
Query 659 AGATTTGCTTCTTCGTTACATTGCAGCTTTCCCTGTGGCTCTTAAGTGTCATGTGATTTA 718
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 729 AGATTTGCTTCTTCGTTACATTGCAGCTTTCCCTGTTGCTCTTAAGTGTCATGTGATTTA 788
Query 719 TGGTTCAGATATCGCAAGAGATCTCCGGAATTTGATAGAAGCAGATGACTTATCTCTGAT 778
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 789 TGGTTCAGATATAGCAAGAGATCTCCGGAACTTGATAGAAGCAGATGACTTATCTCTGAT 848
Query 779 TCTTCAAGCAAAGCATCGTCCCCGTTGTGTAATCGAGTTCATTTCTCAGAGCATTCAGTT 838
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 849 TCTTCAAGCAAAGCATCGTCCGCGTTGTGTAATCGAGTTCATTTCTCAGAGCATTCAGTT 908
Query 839 GCTAAAACTAGACGATGCAAAGAGAGATTTGTTGGAATCAAAGATGTTGCATTTACATGA 898
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 909 GCTAAAACTAGACGATGCAAAGAGAGATTTGTTGGAATCAAAGATGCTGCATTTACATGA 968
Query 899 AGGCATTGGAGTTTGTGAACAACTAATGGGCATTCCGATTCCTCTCTCTTACACACGCTT 958
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 969 AGGAATTGGAGTTTGTGAACAACTCATGGGCATTCCGATTCCTCTCTCTTACACACGCTT 1028
Query 959 AACCTCGAGGTTTTTAGTCTTTTGGCATTTAACTCTCCCAATCATTCTCTGGGATGAATG 1018
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1029 AACCTCGAGGTTTTTAGTCTTTTGGCATCTAACTCTCCCAATCATTCTCTGGGATGAATG 1088
Query 1019 CCATTGGATTGTTGTTCCTGCTACTTTCATTAGTGCTGCATCCCTGTTCTGCATAGAAGA 1078
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1089 CCATTGGATTGTTGTTCCTGCTACTTTCATTAGTGCTGCCTCTCTGTTCTGCATAGAAGA 1148
Query 1079 AGTGGGTGTTCTTATAGAAGAGCCATTTCCTATGTTGGCCTTAGATGAGCTTTGCGATCT 1138
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1149 AGTGGGTGTTCTTATAGAAGAACCATTTCCTATGTTGGCCTTAGATGAGCTTTGCGATCT 1208
Query 1139 TGTGCATAGTAACATCCAAGAAGCTGCTAAATCTGAGAAAGTCATACGTAACCGCATCAT 1198
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1209 TGTGCATAGTAACATCCAAGAAGCTGTTAAATCTGAGAAAGTCATACGTAACCGCATCAT 1268
Query 1199 TGCAAAGATAAAGCTCCGCGAATTCAAGCACTCATCAAATGGTCGGCATAGATCTTGATT 1258
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1269 TGCAAAGATAAAGCTCCATGAATTCAAGCACTCATCAAATGGTCGCCATAGATCTTGATT 1328
Query 1259 TCCCGTTGGTGTGAGTGAT 1277
|| |||||||||||||||
Sbjct 1329 ACCGGTTGGTGTGAGTGAT 1347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62800881795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5