BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939212
Length=1390
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61580.1 | Symbols: | Fatty acid/sphingolipid desaturase | ... 2318 0.0
AT2G46210.1 | Symbols: | Fatty acid/sphingolipid desaturase | ... 992 0.0
> AT3G61580.1 | Symbols: | Fatty acid/sphingolipid desaturase
| chr3:22786047-22787972 FORWARD LENGTH=1926
Length=1926
Score = 2318 bits (1255), Expect = 0.0
Identities = 1351/1396 (97%), Gaps = 11/1396 (1%)
Strand=Plus/Plus
Query 1 GAGCTTTTGGTTCGTTATCAATGGCGGAAGAGACGGAGAAAAAGTACATTACGAACGAAG 60
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 GAGCTTTTGGTTCGTCGTCAATGGCGGAAGAGACGGAGAAAAAGTACATTACGAACGAAG 246
Query 61 AACTTAAAAAACACAACAAATCTGGGGATCTATGGATCGCGATTCAAGGCAAGGTCTACA 120
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 247 ATCTTAAAAAACACAACAAATCTGGAGATCTATGGATCGCGATTCAAGGCAAGGTCTACA 306
Query 121 ACGTCTCCGATTGGATTAAAACTCATCCCGGTGGCGACACCGTGATTCTCAATCTCGTTG 180
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 307 ACGTCTCCGATTGGATTAAAACTCATCCCGGAGGCGACACGGTGATTCTCAATCTCGTTG 366
Query 181 GTCAAGACGTCACCGATGCTTTCATCGCATTTCATCCCGGAACCGCTTGGCATCATCTCG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 367 GTCAAGACGTCACCGATGCTTTCATCGCATTTCATCCCGGAACCGCTTGGCACCATCTCG 426
Query 241 ACAATCTCTTCACCGGTTACCACATCAGAGATTTCCAAGTCTCTGAAGTCTCACGCGATT 300
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 427 ACCATCTCTTCACCGGTTACCACATCAGAGATTTCCAAGTCTCCGAAGTCTCACGCGATT 486
Query 301 ACCGTCGCATGGCTGCCGAGTTTCGTAAACTCGGTCTCTTCGAAAACAAAGGTCACGTTA 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 ACCGTCGTATGGCTGCCGAGTTTCGTAAACTCGGTCTCTTCGAAAACAAAGGTCACGTTA 546
Query 361 CTCTCTACACTTTAGCCTTCGTCGCCGCCATGTTCGTCGGCGTTCTCTACGGTGTTTTGG 420
||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 547 CTCTCTACACTCTAGCCTTCGTCGCCGCCATGTTCCTCGGAGTTCTCTACGGTGTTTTGG 606
Query 421 CTTGTACTTCCGTCTTCGCTCACCAAATCGCCGCCGCGCTTCTCGGACTCCTCTGGATCC 480
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 607 CTTGTACCTCCGTCTTCGCTCACCAAATCGCCGCCGCGCTTCTCGGTCTCCTCTGGATCC 666
Query 481 AGAGCGCTTACATAGGTCACGATTCAGGTCATTACG-TAGTCATGTCGAACAAATCTTAT 539
||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||
Sbjct 667 AGAGCGCTTACATAGGTCACGATTCTGGTCATTACGTTA-TCATGTCGAACAAATCTTAT 725
Query 540 AACAGATTCGCTCAGCTTCTCTCCGGTAACTGTCTCACCGGAATCTCAATCGCTTGGTGG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 726 AACAGATTCGCTCAGCTTCTCTCCGGTAACTGTCTCACCGGAATCTCAATCGCGTGGTGG 785
Query 600 AAATGGACTCACAATGCTCATCACT-TAGCTTGTAACAGCCTCGATTACGATCCAGATCT 658
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 786 AAATGGACTCACAATGCTCATCA-TCTAGCTTGTAACAGCCTCGATTACGATCCAGATCT 844
Query 659 ACAACACATCCCTGTCTTCGCCGTCTCCACCAAATTCTTCAACTCATTGACATC-ACGAT 717
|||||||||||||||||||||||||||||||||||||||| ||||||||| || | |||
Sbjct 845 ACAACACATCCCTGTCTTCGCCGTCTCCACCAAATTCTTCTCCTCATTGACCTCGA-GAT 903
Query 718 TCTACGATCGGAAACTCACGTTTGATCCAGTCGCGAGATTCTTGA-TCAGCTATCAACAC 776
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 904 TCTACGATCGGAAACTCACGTTTGATCCAGTCGCGAGATTCTT-AGTCAGCTATCAACAC 962
Query 777 TTTACTTATTATCCAGTTATGTGCTTCGGAAGAATCAATCTCTTCATTCAAACGTTTATC 836
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 963 TTTACTTATTATCCAGTTATGTGCTTTGGAAGAATCAATCTCTTCATTCAAACGTTTCTC 1022
Query 837 TTGCTCTTCTCCAAACGTGAAGTCCCAGATCGTGCTTTAAACTTCGCCGGAATCTTAGTC 896
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1023 TTGCTCTTCTCCAAACGTGAAGTACCAGATCGTGCTTTAAACTTCGCCGGAATCTTAGTC 1082
Query 897 TTCTGGACTTGGTTCCCTCTCTTAGTCTCATGTCTACCAAACTGGCCTGAAAGATTCTTC 956
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1083 TTCTGGACTTGGTTCCCACTCTTAGTCTCATGTCTACCAAACTGGCCTGAGAGATTCTTC 1142
Query 957 TTCGTCTTCACAAGCTTCACCGTCACGGCGCTTCAACACATTCAATTCACGCTTAACCAT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 TTCGTCTTCACAAGCTTCACCGTCACGGCGCTTCAACACATTCAATTCACGCTTAACCAT 1202
Query 1017 TTCGCTGCGGATGTCTACGTTGGTCCACCCACAGGTAGCGACTGGTTCGAGAAGCAAGCT 1076
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1203 TTCGCTGCTGATGTCTACGTTGGTCCACCCACCGGTAGCGACTGGTTCGAGAAGCAAGCG 1262
Query 1077 GCAGGAACAATCGATATCTCTTGTAGATCATACATGGATTGGTTCTTTGGTGGATTACAG 1136
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 GCGGGAACAATCGATATCTCTTGTAGATCATACATGGATTGGTTCTTTGGTGGATTACAG 1322
Query 1137 TTTCAGCTTGAGCATCATTTGTTCCCTCGGCT-ACCTCGTTGCCATCTCCGGAAAGTTTC 1195
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1323 TTTCAGCTTGAGCATCATTTGTTCCCTCG-CTTACCTCGTTGCCATCTCCGGAAAGTTTC 1381
Query 1196 TCCGGTGGTTCAAGAGCTTTGCAAGAAGCATAATCTTCCTTATAGGAGTATGTCGTGGTT 1255
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1382 TCCGGTGGTTCAAGAGCTTTGCAAGAAGCATAATCTTCCGTATAGGAGTATGTCGTGGTT 1441
Query 1256 TGAAGCAAATGTGTTGACTATTAACACTTTGAAGACAGCAGCTTATCAAGCTAGAGATGC 1315
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1442 TGAAGCAAATGTGTTGACCATTAACACTTTGAAGACAGCAGCTTATCAAGCTAGAGACGT 1501
Query 1316 GGCTAATCCGGTGGTTAAGAACTTGGTTTGGGAAGCTTTGAATACTCATGGCTAG-TGAT 1374
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1502 GGCTAATCCGGTGGTTAAGAACTTGGTTTGGGAAGCTTTGAATACTCATGGCTAAATGAT 1561
Query 1375 TTTAATCAAAACAAAA 1390
||||||||||||||||
Sbjct 1562 TTTAATCAAAACAAAA 1577
> AT2G46210.1 | Symbols: | Fatty acid/sphingolipid desaturase
| chr2:18977344-18979001 FORWARD LENGTH=1658
Length=1658
Score = 992 bits (537), Expect = 0.0
Identities = 1111/1384 (80%), Gaps = 55/1384 (4%)
Strand=Plus/Plus
Query 14 GTT-ATCAATGGCGGAAGAGACGGAGAAAAAG-TACATTACGAA-CGAAGAACTT-AAAA 69
||| |||||||||||| | ||| || || || ||| |||| || || || | || ||||
Sbjct 191 GTTCATCAATGGCGGATCAAACGAAG-AAGAGATACGTTAC-AAGCG-AGGATTTGAAAA 247
Query 70 AACACAACAAATCTGGGGATCTATGGATCGCGATTCAAGGCAAGGTCTACAACGTCTCCG 129
||||||||||| |||| ||| ||||||| |||||||||| || || ||| |||| ||||
Sbjct 248 AACACAACAAACCTGGAGATTTATGGATTTCGATTCAAGGTAAAGTTTACGACGTTTCCG 307
Query 130 ATTGGATTAAAACTCATCCCGGTGGCGACA-CCGTGATTCTCAATCTCGTTGGTCAAGAC 188
||||| ||||| |||||||||| ||||| | | | |||||||||||||| || ||||||
Sbjct 308 ATTGGGTTAAATCTCATCCCGGAGGCGA-AGCAGCGATTCTCAATCTCGCCGGCCAAGAC 366
Query 189 GTCACCGATGCTTTCATCGCATT-TCATCCCGGAACCGCTTGGCATCATC-TCGACAATC 246
|||||||| || |||||||| || |||||||||||||| ||||| || | | || ||
Sbjct 367 GTCACCGACGCGTTCATCGC-TTACCATCCCGGAACCGCATGGCACCA-CTTAGA-AA-A 422
Query 247 TCTTCAC--CGGTTACCACATCAGAGATTTCCAAGTCTCTGAAGTCTCACGCGATTACCG 304
|||||| || || ||| | ||||| ||| || || || |||||||| || |||||
Sbjct 423 GCTTCACAATGGCTATCACGTGAGAGACCACCACGTGTCAGACGTCTCACGTGACTACCG 482
Query 305 TCGCATGGCTGCCGAGTT-TCGTAAACTCGGTCTCTTCGA-AAACAAAGGTCACGTTACT 362
||| | || |||||||| || |||| ||| |||||||| ||| ||||||||||| |||
Sbjct 483 TCGTTTAGCCGCCGAGTTCTC-CAAACGCGGCCTCTTCGACAAA-AAAGGTCACGTGACT 540
Query 363 CTCTACAC-TTTAGCCTTCGTCGCCGCCATGTTCGTCGGC-GTTCTCTACGGTGTTTTGG 420
|| ||||| | | | | ||||| || |||| ||| |||| ||||||||||| |||||||
Sbjct 541 CTTTACACACTCA-CGTGCGTCGGCGTCATGCTCG-CGGCGGTTCTCTACGGCGTTTTGG 598
Query 421 CTTGTACTTCCGTCTTCGCTCACCAAATCGCCGCCGCGCTT-CTCGGACTCCTCTGGATC 479
| ||||| | ||| ||||||| ||| |||||| || ||||| ||||||||||||
Sbjct 599 CGTGTACCAGCATCTGGGCTCACCTCATCTCCGCCG-TTTTACTCGGTCTCCTCTGGATC 657
Query 480 CAGAGCGCTTACATAGGTCACGATTCAGGTCATTACGTAGTCATGTCGAA-CAAATCTTA 538
|| ||||||||| | || |||||||| ||||| ||| || | ||| || |||| | |
Sbjct 658 CAAAGCGCTTACGTCGGCCACGATTCCGGTCACTACACGGTGACGTC-AACCAAACCGTG 716
Query 539 TAACAGA-TTCGCTCAGCTTCTCTCCGGTAACTGTCTCACCGGAATCTCAATCGCTTGGT 597
||||| | | | ||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 717 TAACAAACTAATC-CAGCTTCTCTCCGGTAACTGTCTCACCGGCATCTCAATCGCGTGGT 775
Query 598 GGAAATGGACTCACAATGCTCATCACTTAGCTTGTAACAGCCTCGATTACGATCCAGATC 657
|||||||||| ||||| ||||| ||| | |||||||||||||| || ||||||| ||||
Sbjct 776 GGAAATGGACGCACAACGCTCACCACATCGCTTGTAACAGCCTTGACCACGATCCGGATC 835
Query 658 TACAACACATCCCTG-TCTTCGCCGTCTCCACCAAATTCTTCAACTC-ATTGACATCACG 715
||||||||||||| | ||||||||||||| || ||||||||||| || || ||| |||||
Sbjct 836 TACAACACATCCC-GATCTTCGCCGTCTCTACAAAATTCTTCAATTCGAT-GACGTCACG 893
Query 716 ATTCTACGATC-GGAAACTCACGTTTGATCCAGTCGCGAGATTCTTGATCAGCTATCAAC 774
||||| | | ||||| | || || ||||| | || ||||||| |||||||| ||||
Sbjct 894 TTTCTATGG-CAGGAAATTAACATTCGATCCTCTAGCTCGATTCTTAATCAGCTACCAAC 952
Query 775 ACTTTAC-TTATTATCCAGTTATGTGCTTCGGAAGAATCAATCTCTTCATTCAAACGTTT 833
||| || || ||| ||||| |||||| ||||||||||||| |||||||| ||||| ||
Sbjct 953 ACTGGACATT-TTACCCAGTAATGTGCGTCGGAAGAATCAACCTCTTCATCCAAACATTC 1011
Query 834 ATCTTGCTCTTCTCCAAACGTGAAGTCCCAGATCGTGCTTTAAACTTCGCCGGAATCTTA 893
| ||||| ||||| ||||| | ||||||||||| || || ||| |||||||||| |||
Sbjct 1012 CTATTGCTATTCTCGAAACGCCACGTCCCAGATCGGGCCTTGAACATCGCCGGAATTTTA 1071
Query 894 GTCTTCTGGACTTGGTTCCCTCTCTTAGTCTCATGTC-TACCAAACTGGCCTGAAAGATT 952
|| |||||||| |||||||||||||||||||| | || | || || |||| || |||||
Sbjct 1072 GTTTTCTGGACATGGTTCCCTCTCTTAGTCTCGT-TCCTTCCGAATTGGCAAGAGAGATT 1130
Query 953 CTTCTTCGTCTTCACAAGCTTCACCGTCACGGCGCTTCAACACATTCAATTCACGCTTAA 1012
| ||||||||||| |||||| ||||||||||| ||||||| |||| ||| | ||||
Sbjct 1131 CATCTTCGTCTTCGTGAGCTTCGCCGTCACGGCGATTCAACATGTTCAGTTCT-GTTTAA 1189
Query 1013 -CCATTTCGCTGCGGATGTCTACGTTGGTCCACCCA-CAGGTAGCGACTGGTTCGAGAAG 1070
||||||||| || ||||| || |||||||| | | || | ||| ||||| |||||
Sbjct 1190 ACCATTTCGCAGCAGATGTGTATACCGGTCCACCAAAC-GGAAACGATTGGTTTGAGAAA 1248
Query 1071 CAAGCTGCAGGAACAATCGATATCTCTTGTAGATCATACATGGATTGGTTCTTTGGTGGA 1130
||| | || || || | ||||| || |||||||| | |||||||||||||||||||||
Sbjct 1249 CAAACCGCCGGTACGCTTGATATATCGTGTAGATCGTTTATGGATTGGTTCTTTGGTGGA 1308
Query 1131 TTACAGTTTCAGCTT-GAGCATCATTTGTTCCCTCGGCTACCTCGTTGCCATCTCCGGAA 1189
|| ||||||||| || |||||||||||||| |||||||| |||||||| ||||||||||
Sbjct 1309 TTGCAGTTTCAG-TTAGAGCATCATTTGTTTCCTCGGCTTCCTCGTTGTCATCTCCGGAC 1367
Query 1190 AGTTTCTCCGGTGGTTCAAG-AGCTTTGCAAGAAGCATAATCTTCCTTATAGGAGTATGT 1248
||| || ||||||||| ||| ||||||| |||||||||||||| || ||||||||| | |
Sbjct 1368 AGTATCGCCGGTGGTT-AAGGAGCTTTGTAAGAAGCATAATCTACCGTATAGGAGTCTTT 1426
Query 1249 CGTGGTTTGAAGCAAATGTGTTGACTATTAACACTTTGAAGA-CAGCAGCTTAT-CAAGC 1306
|||||| ||||| ||||||| ||| |||| |||||||||| | || || || |||||
Sbjct 1427 CGTGGTGGGAAGCTAATGTGTGGACGATTAGGACTTTGAAGAAC-GCGGCG-ATTCAAGC 1484
Query 1307 TAGAGATGCGGCTAATCCGGTGGTT-AAGAACTTGGTTTGGGAAGCTTTGAATACTCATG 1365
|||||||||| ||||||| ||| || ||||||||| ||||||||||| |||| || ||||
Sbjct 1485 TAGAGATGCGACTAATCCTGTG-TTGAAGAACTTGCTTTGGGAAGCTGTGAACACGCATG 1543
Query 1366 GCTA 1369
||||
Sbjct 1544 GCTA 1547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68473543380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5