BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939248
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61770.1 | Symbols: | Acid phosphatase/vanadium-dependent h... 1502 0.0
> AT3G61770.1 | Symbols: | Acid phosphatase/vanadium-dependent
haloperoxidase-related protein | chr3:22864543-22866407 FORWARD
LENGTH=1106
Length=1106
Score = 1502 bits (813), Expect = 0.0
Identities = 880/912 (96%), Gaps = 6/912 (1%)
Strand=Plus/Plus
Query 1 TAGCAGCAACTTAATTCTCTCATGGAGTCTCTTACATCAAATCCTTCCTTCGCTTGTTTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 TAGCAGCAACTTAATTCTCTCATGGAGTCTCTTACATCAAATCCTTCCTTCGCTTGTTTC 131
Query 61 TCAAAAACCATTTCTCATTATCCTTCTCGTCTCTCCTTCGTAAAGCTAACTTCTATCCAA 120
|| ||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||
Sbjct 132 TCTAAAACCATTTCTCATTACCCTTCTCGTTTCTCCTTCGTAAAGCTAACCTCTATCCAA 191
Query 121 AAGTTGGAAGCTTCCAACAACACCTTATCGTTATTTTGCTGTAAATCATCCTCTTCGAAT 180
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 192 AAGTTGGAAGCTTCCAACAACACCTTATCGTTATTCTGCTGTAAATCA---TCTTCGAAT 248
Query 181 CCTAAACCAGATTGCAATCGTCGTATAAAGTTAAACCCTTTTTGTGTATTGCGCCCAATC 240
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 249 CCTAAACCAGATTGCAATCGTCGTATCAAGTTAAACCCTTTATGTGTATTGCGTCCAATC 308
Query 241 ATTCGAACAATAAAGGGTTTGGTTTCTTCTCAATCCAGGCTATGGATGTCTCGTTTTCGA 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 309 ATTCGAACAATAAAGGGTTTGGTTTCTTCTCAATCCAGGCAATGGATGTCTCGTTTTCGA 368
Query 301 GCTTACAGAGACGACACGGCGGCGTTTTCGGAGGATTTCGCCGGAGATTTGAAGCATAAC 360
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 369 GCTTACAGAGACGACACGGCGGCGTTTTCTGAGGATTTCGCTGGAGATTTGAAGCATAAC 428
Query 361 GGTGGATTAGGGATTGCCCTTTTGAGCGTTACTGCTTCCGCTAAGATAAAGATTAGCCCT 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 429 GGTGGATTAGGGATTGCCCTTTTGAGCGTTACTGCTTCTGCTAAGATAAAGATTAGCCCT 488
Query 421 TTCGTTGCGACGCTCTCTGCGAATCCAACTTTCGTTTCAGCTGTAGTCGCGTGGTTCTTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 TTCGTTGCGACGCTCTCTGCGAATCCAACTTTCGTTTCAGCTGTAGTCGCGTGGTTCTTT 548
Query 481 GCGCAATCGAGTAAAATGGTTATCAATTTCTTCATTGAGAGGAAATGGGATTTTCGTCTT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 GCGCAATCGAGTAAAATGGTTATCAATTTCTTCATTGAGAGGAAATGGGATTTTCGTCTT 608
Query 541 CTCTATGCTTCTGGTGGAATGCCTTCGTCTCACTCGGCTCTATGTATGGCTTTGACGACC 600
||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 609 CTCTATGCTTCTGGTGGGATGCCTTCGTCTCACTCAGCTTTATGTATGGCTTTGACGACC 668
Query 601 TCTGTGGCGCTTTGTCATGGAGTTGCAGATTCTTTGTTTCCTGTTTGTTTAGGGTTTAGC 660
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 669 TCTGTGGCGCTTTGTCATGGAGTTGCAGATTCCTTGTTTCCTGTTTGTTTAGGGTTTAGC 728
Query 661 TTGATTGTGATGTATGATGCAATTGGTGTTAGACGCCATGCCGGTATGCAAGCTGAGGTT 720
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 TTGATTGTCATGTATGATGCAATTGGTGTTAGACGCCATGCCGGTATGCAAGCTGAGGTT 788
Query 721 CTGAACTTGATCATAAGGGACTTGTTCGAAGGACATCCCATCAGTCAAAGAAAGCTAAAG 780
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 789 CTGAACTTGATCATTAGGGACTTGTTCGAAGGACATCCCATCAGTCAAAGAAAGCTTAAG 848
Query 781 GAATTGCTCGGTCACACTCCTTCGCAGGTTCTTGCTGGAGCATTGGTTGGTATTGTGATT 840
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 GAACTGCTTGGTCACACTCCTTCGCAGGTTCTTGCTGGAGCATTGGTTGGTATTGTGATT 908
Query 841 GCTTGCTTTTGTTGCCAAGGCTATATCGTCTCAGCCTAAGAAC-T--CTTTTATTCAAAG 897
|||||||||||||||||||||||| ||||||||| ||||||| | ||||||||| |||
Sbjct 909 GCTTGCTTTTGTTGCCAAGGCTATCTCGTCTCAGTCTAAGAAGATGTCTTTTATTCCAAG 968
Query 898 TGTTCTGGTTGG 909
|| |||||||||
Sbjct 969 TGATCTGGTTGG 980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44406985948
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5