BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg939309 Length=2478 Score E Sequences producing significant alignments: (Bits) Value AT3G62240.1 | Symbols: | RING/U-box superfamily protein | chr3... 3864 0.0 > AT3G62240.1 | Symbols: | RING/U-box superfamily protein | chr3:23033442-23036765 REVERSE LENGTH=2701 Length=2701 Score = 3864 bits (2092), Expect = 0.0 Identities = 2346/2470 (95%), Gaps = 11/2470 (0%) Strand=Plus/Plus Query 4 CAAATTCAAGAAGAGACATGGATGATAGCTGTGCCGTCTGCGCTGACAATCTCGAATGGG 63 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 96 CAAATTCAGGAAGAGACATGGATGATAGCTGTGCCGTCTGCGCTGACAATCTCGAATGGG 155 Query 64 TTGCCTATGGATCTTGTGGTCACCGTGAGGTTTGCTCCACTTGCGTCGTTCGTCTCCGAT 123 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 156 TTGCCTATGGATCTTGTGGTCACCGAGAGGTTTGCTCCACATGCGTCGTTCGTCTCCGAT 215 Query 124 TCGTCCTCGACGATCCTCGCTGCTGTATTTGCAAGACCGAGTCTCCTATCGTTTTTGTCA 183 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 216 TCGTCCTCGACGATCCTCGCTGCTGTATCTGCAAGACCGAGTCTCCTATCGTTTTTGTCA 275 Query 184 CCAAGGCATTGGGTGATTATACGAGGACGATCACTGACTTCTCCACCTTCCCATCAGCAC 243 |||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||| Sbjct 276 CCAAGGCATTGGGTGATTATACAAGGACGATCAATGATTTCTCCACCTTCCCATCAGCAC 335 Query 244 CAAGGGAAGGGCGAGTAGGAGCTTTCTGGTATCATGAAGACACTCAGGCTTTCTTTGATG 303 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 336 CAAGGGAAGGTCGAGTAGGAGCTTTCTGGTATCATGAAGACACTCAGGCTTTCTTTGATG 395 Query 304 ACTTGGATCATTACAGGATGATCAAAGCTATGTGTAGACTCTCCTGCGGTGTTTGTGACA 363 |||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| | Sbjct 396 ACTTGGATCAGTACAGGATGATCAAAGCTATGTGTAGACTTTCTTGCGGTGTTTGTGATA 455 Query 364 AGGCGGAAGATCAACCTAGAGAAGGAGGACCAAGACATCATCGGCAGAGGATTAAGAGCG 423 || |||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 456 AGACGGAAGATAAACCTAGAGAAGGAGGACCAAGACATCATCGTCAGCGGATTAAGAGCG 515 Query 424 TTGAACAGTTGAAGGGTCATTTATATCATAAGCACAAATTGCATATGTGTGGTTTATGTC 483 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 516 TCGAACAGTTGAAGGGTCATTTATATCATAAGCACAAATTGCATATGTGTGGTTTATGTC 575 Query 484 TCGAAGGGCGAAAGATATTCATATGTGAACAAAAGTTGTATACTAGGGCACAACTGAACC 543 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 576 TAGAAGGGCGAAAGATATTCATATGTGAACAAAAGTTGTATACTAGGGCACAACTGAACC 635 Query 544 AACACATACACACTGGTGACTCTGAAGTTGATGGAAGTGAGAGTGAAAGGGGTGGCTTCG 603 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 636 AACACATACAGACTGGTGACTCTGAAGTTGATGGAAGTGAGAGTGAAAGGGGAGGCTTCG 695 Query 604 CTGGACATCCTATGTGTGAATTCTGTAGGAATCCTTTCTATGGTGATAATGAATTGTATA 663 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 696 CAGGACATCCTATGTGTGAATTCTGTAGGAATCCTTTCTATGGTGATAATGAATTGTATA 755 Query 664 CTCACATGTCTACAGAGCATTACACATGTCATTTATGCCAAAGGTCACAGCCAGGACAAT 723 ||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||| Sbjct 756 CTCACATGTCTACAGAGCATTACACCTGTCATCTATGCCAAAGGTCACAGCCAGGGCAAT 815 Query 724 ATGAATATTACAAAAACTATGATGACTTGGAGATTCATTTCCGTAGAGACCATTTCCTCT 783 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 816 ATGAATATTACAAAAACTATGATGACTTAGAGATTCATTTCCGTAGAGACCATTTCCTCT 875 Query 784 GTGAAGACGACTCCTGCCTTGCTAAGAAGTTCACAGTTTTCCAGAATGAATCAGAGTTGA 843 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 876 GTGAAGACGACTCCTGCCTTGCTAAGAAGTTCACAGTTTTCCAGAATGAATCAGAGTTGA 935 Query 844 AAAGGCATAACGCTATTGAGCATGGAGGTAAAATGTCTCGGTCTCAGCGAAGTGCTGCAT 903 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 936 AAAGGCATAACGCTATTGAGCATGGAGGTAAAATGTCTCGGTCTCAGCGAAGTGCTGCAT 995 Query 904 TACAGATACCAACAAGTTTCCGATACCGACGTGGAAATGATCAAGAGAATCGTCGTGGAA 963 |||||||||| ||||||||||||||| | |||||||||||||||||||||||||| |||| Sbjct 996 TACAGATACCGACAAGTTTCCGATACAGTCGTGGAAATGATCAAGAGAATCGTCGAGGAA 1055 Query 964 GACCCCGATCATTTCGTCGCGAGCCTGGTGATGATGAATATAATCTTGCAGTTCATGCGG 1023 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 1056 GACCCCGATCATTTCGTCGCGAGCCTGGTGATGAAGAATATAATCTTGCAGTTCATGCCG 1115 Query 1024 CTCTTCGTTTATCTGAGGCTGAGTATTCTCGGCAAGAGCCTGCTCCTCCACCCTCAAGTG 1083 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1116 CTCTTCGTTTATCTGAGTCTGAGTATTCTCGGCAAGAGCCTGCTCCTCCACCCTCAAGTG 1175 Query 1084 CACCACCTGGATTCTCTGAAAACAACAACATACACGTGGATGATGCTGATCTTCTTCTTC 1143 ||||||| |||||||||||||||||||||||||||||||||||| |||||| ||| ||| Sbjct 1176 CACCACCCGGATTCTCTGAAAACAACAACATACACGTGGATGATACTGATCCCCTTATTC 1235 Query 1144 AGCCAATGGAATCTCTATCAACTACAGATATGGAACCCTCTTCACGATATCTTCAAGCCG 1203 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 1236 AGCCAATGGAATCTCTATCAACTACAGATATGGAACCCTCTTCACGGTATCTTCAAGCTG 1295 Query 1204 TAGGAAGCTCTGGTGGTGGTGGTACACGTCTTGGAGAATCTGCTTTTCCTCCTCTTTCTG 1263 ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1296 TAGGAAGCTTTGGTGGTGGTGGTTCACGTCTTGGAGAATCTGCTTTTCCTCCTCTTTCTG 1355 Query 1264 GTCAACCGAGATCTGGACAGAACGTAGAGAGTTTACCTACTAACACCATGGCTGCTCGTC 1323 | |||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1356 GGCAACAGAGTTCTGGACAGAACGTAGAGAGTTTACCAACTAACACCATGGCTGCTCGTC 1415 Query 1324 TAAGACGCCAAACAAATCGAACTACTACTGCTTCTGCTATTGCTAGTCCTTCTCAAGGAT 1383 ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 1416 TAAGACGCCAAACAAATCGAACTTCTACTGCTTCCGCTATTGCTAGTCCTTCTCAAGGAT 1475 Query 1384 GGCCAGTGGTTAACCGAGGCCCAGCG-CAAGCATCTATAACAAGTGGCGGTAATCATTCT 1442 |||||||| |||| |||||||||| | ||||||||||| |||||||| |||||||||||| Sbjct 1476 GGCCAGTGATTAATCGAGGCCCAG-GACAAGCATCTATTACAAGTGGAGGTAATCATTCT 1534 Query 1443 TCTTCGGGATGGCCAGCAATAGGTCGAACGCCTGTACAAGCCTCTAGTTCTTCAGTCCAA 1502 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1535 TCTTCAGGATGGCCAGCTATAGGTCGAACGCCTGTACAAGCCTCTAGTTCTTCAGTCCAA 1594 Query 1503 TCTATGTCCCATAGCAGAGTATCACAGGCTCGACCGCTGGCTCCTACAGTTTCACAGGCT 1562 |||| |||||||| |||||| ||||| ||||||| |||||| || ||||| |||||||| Sbjct 1595 TCTAGGTCCCATAACAGAGTTTCACAACCTCGACCTCTGGCTTCTGCAGTTCCACAGGCT 1654 Query 1563 GCTCGTAATGCGAACAGGATTCCTCACTCTTCCTCAGCCCCTAATCTATCTGATACAAGA 1622 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1655 GCTCGTAATGCAAATAGGATTCCTCACTCTTCCTCAGCCCCTAATCTATCTGATACAAGA 1714 Query 1623 TCACATCAGCCTTTTCATTCAGAGTTTCCTCCAGTTTCTTCTGCTGTTGTGCAAAATCGT 1682 |||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1715 TCACTTCAGCCTTCTCATTCAGATTTTCCTCCAGTTTCTTCTGCTGTTGTGCAAAATCGT 1774 Query 1683 AAGACATCATCCACCACTACACATGGATCATCAAACACTCAACCCCCTCCTGATGTTCAA 1742 || |||||||| ||||||||||| ||||| |||||||||||||||||||| ||||| ||| Sbjct 1775 AAAACATCATCAACCACTACACAGGGATCGTCAAACACTCAACCCCCTCCAGATGTACAA 1834 Query 1743 TCTGCCAACAAGTCATTGATTGAGAAAATGCGATCTGCACTTGGTCATGATGAAGATGTA 1802 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1835 TCTGCCAACAAGTCATTGATTGAGAAAATGCGATCTGCACTTGGTCATGATGAAGATGTA 1894 Query 1803 TTTGTGGCATTCAGGAATATATCAGGACAGTATCGTCAAGGTTCGATTGATGCAAAGACT 1862 || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1895 TTCGTGGCCTTCAGGAATATATCAGGACAGTATCGTCAAGGTTCCATTGATGCAAAGACT 1954 Query 1863 TATTTGGAATATGTGAAAGGATATGGATTGTCTCACTTGGTTATTGATCTTGCTAGACTG 1922 |||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1955 TATTTGGAGTATGTGCAAGGTTATGGATTGTCTCACTTGGTTATTGATCTTGCTAGACTG 2014 Query 1923 TGTCCTGACCCTAAAAGGCAGAAGGAACTCATTGATACCCATAATACCAGTTTGAGAGAA 1982 |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2015 TGTCCTGACCCTAAGAGGCAGAAGGAACTCATTGATACCCATAATGCCAGTTTGAGAGAA 2074 Query 1983 GAAGATTCAAAGGAGAATGGTCGG-GCTGCTGCCCAGAGCTCTTCTCAACCTAAAGATAG 2041 || ||||||||||| ||||||||| | |||||| |||||||||||||| |||||||| || Sbjct 2075 GAGGATTCAAAGGATAATGGTCGGAG-TGCTGCGCAGAGCTCTTCTCAGCCTAAAGAGAG 2133 Query 2042 TCAAAGTTCAAAGAAAAACAAAGGAAAAGCTGTGAAAGTTGTTGACCCGAAAGAAACATT 2101 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 2134 TCAAAGTTCAAAGAAAAACAAAGGAAAAGCTGTGAAAGTTGTTGACCCTAAAGAAACACT 2193 Query 2102 AGCAGATAACTTTATGGACACAGTAAGGAGATTACAATCTTCTCAGAATCCCCAGGAAGA 2161 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2194 AGCAGATAACTTTATGGACACAGTAAGGAGATTACAATCTTCTCAGAATCCACAGGAAGA 2253 Query 2162 AGAAGAGGTG---ATATCTAAGGATAAGAATTCTTATAGGTCAGACAAAGGTAAATCACA 2218 |||||||| | ||||| |||||||||||| | ||||| ||||||||||| |||||||| Sbjct 2254 AGAAGAGGAGGCGATATCAAAGGATAAGAATACCTATAGATCAGACAAAGGCAAATCACA 2313 Query 2219 AGTAACAGGAACTGATTCTTCTTCAACCGGAAACAAGCAGCAACGTAAGAAAACTTCTAA 2278 |||| |||||| ||||||||||| || |||| ||| ||||||||||||||||||||||| Sbjct 2314 AGTAGTAGGAACGGATTCTTCTTCCACAGGAAGCAAACAGCAACGTAAGAAAACTTCTAA 2373 Query 2279 GTTTCACAGAGTACGGCTTGGTGATGGATCAATGGCTGCCTTACTAGATCTTAACAATTC 2338 ||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| Sbjct 2374 GTTTCACAGAGTACGGCTTGGAGATGGATCAATGGCTGCCTTGCTGGATCTTAACAATTC 2433 Query 2339 TAAC-CGTGAGTCTGAACAAGAATCAAAGGATGGTAATTCCAACAGTAACCAAAATCAGA 2397 || | || ||||||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 2434 TA-CTCGCGAGTCTGAACAAGAATCTAAGGATAGTAATTCCAACAGTAACCAAAATCAGA 2492 Query 2398 CCGGTGGTTTACCGGTTGGAGGCGTTTGGCGTAAAGGAGGTGCAAACCTTTTCTCGTAGA 2457 ||||||||||||||||| | || |||||||||||||||||||| |||||||||||||| | Sbjct 2493 CCGGTGGTTTACCGGTTCGTGGGGTTTGGCGTAAAGGAGGTGCTAACCTTTTCTCGTAAA 2552 Query 2458 GA-CTTAATT 2466 || || |||| Sbjct 2553 GAACT-AATT 2561 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 122959177293 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5