BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939346
Length=1082
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62600.1 | Symbols: ATERDJ3B, ERDJ3B | DNAJ heat shock famil... 1777 0.0
> AT3G62600.1 | Symbols: ATERDJ3B, ERDJ3B | DNAJ heat shock family
protein | chr3:23150790-23153510 REVERSE LENGTH=1453
Length=1453
Score = 1777 bits (962), Expect = 0.0
Identities = 1042/1081 (96%), Gaps = 4/1081 (0%)
Strand=Plus/Plus
Query 5 TCCTGATTTCCGTTTCTATGGCGATTCGGTGGTCGGAGTTGTGTATCGTATTGTTCGCTC 64
||| |||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 149 TCC-GATTTCCGTTTCCATGGCGATTCGGTGGTCGGAGCTGTGTATCGTACTGTTCGCTC 207
Query 65 TTTCTTATGCCATTTGCGTCCTTGCCGGGAAGAGTTACTACGATGTGTTGCAAGTTCCGA 124
|||| || ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 208 TTTCCTACGCCATCTGCGTCCTTGCCGGGAAGAGTTACTACGATGTGTTGCAAGTCCCGA 267
Query 125 AAGGTGCATCTGACGAACAGATCAAGAGAGCTTATAGGAAACTCGCTTTGAAGTATCATC 184
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 268 AAGGTGCATCTGATGAACAGATCAAGAGAGCTTATAGGAAACTAGCTTTGAAGTATCATC 327
Query 185 CGGATAAGAATCAAGGAAATGAGGAAGCGACTCGCAAATTCGCTGAGATCAACAATGCTT 244
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 CCGATAAGAATCAAGGAAATGAGGAAGCGACTCGCAAATTCGCTGAGATCAACAATGCTT 387
Query 245 ATGAAGTGTTATCGGATGAGGAGAAGAGGGAGATATATAACAAGTATGGTGAAGAGGGAC 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 ATGAAGTGTTATCGGATGAGGAGAAGAGGGAGATATATAACAAGTATGGTGAAGAGGGAC 447
Query 305 TTAAACAGTTTTCTGCAAATGGAGGAAGAGGAGGTGGAGGCGGAGGCATGAATATGCAGG 364
|||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 448 TTAAACAGTTTTCTGCAAATGGAGGAAGAGGAGGAGGAGGAGGCGGCATGAATATGCAGG 507
Query 365 ACATTTTTAGCTCGTTTTTCGGTGGAGGTTCGATGGAGGAAGAAGAGAAGGTTGTCAAGG 424
|||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 508 ACATCTTCAGCTCGTTTTTTGGTGGAGGTTCGATGGAGGAAGAAGAGAAGGTTGTCAAGG 567
Query 425 GTGATGACGTGATTGTGGAACTTGAGGCAACTCTAGAAGATTTGTACATGGGAGGCTCTA 484
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 GGGATGACGTAATTGTGGAACTTGAGGCAACTCTAGAAGATTTGTACATGGGAGGCTCTA 627
Query 485 TGAAGGTATGGAGGGAAAAGAATGTGATAAAACCAGCTCCTGGAAAGAGAAAGTGTAACT 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 TGAAGGTATGGAGGGAAAAGAATGTGATAAAACCAGCTCCTGGAAAGAGAAAGTGTAACT 687
Query 545 GCAGGAACGAGGTCTACCACAGACAAATTGGTCCTGGAATGTTCCAACAGATGACAGAGC 604
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 GCAGGAACGAGGTCTATCACAGACAAATTGGTCCTGGAATGTTCCAACAGATGACAGAGC 747
Query 605 AGGTCTGTGACAAATGCCCTAATGTCAAATACGAACGGGAGGGATACTTTGTGACAGTTG 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 AGGTCTGTGACAAATGCCCTAATGTCAAATACGAACGGGAGGGATACTTTGTGACAGTTG 807
Query 665 ATATCGAGAAAGGAATGAAAGATGGAGAAGAAGTGTCTTTCTATGAAGACGGTGAACCCA 724
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 808 ATATCGAGAAAGGAATGAAAGATGGAGAAGAAGTGTCTTTCTATGAAGACGGCGAACCCA 867
Query 725 TTCTCGACGGTGAACCTGGTGACCTTAAGTTTCGAATCAGAACTGCACCACACACCCGTT 784
|||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 868 TTCTTGACGGTGACCCTGGTGACCTTAAGTTCCGAATCAGAACTGCACCACATGCCCGTT 927
Query 785 TCCGAAGAGATGGCAACGATCTACACATGACCGTTAACATAACACTGGTTGAGGCGCTAG 844
|| |||| |||||||||||||||||||||| ||| ||||| |||||||||||||||||||
Sbjct 928 TCAGAAGGGATGGCAACGATCTACACATGAACGTGAACATTACACTGGTTGAGGCGCTAG 987
Query 845 TTGGTTTTGAGAAATCATTCAAACACTTAGATGATCACGAAGTTGACATCAGTTCCAAGG 904
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 988 TTGGTTTTGAGAAATCATTCAAACACTTGGATGATCACGAAGTTGACATCAGTTCCAAGG 1047
Query 905 GAATTACAAAGCCGAAGGAAGTGAAGAAGTTCAAAGGAGAAGGGATGCCACTTCACTACA 964
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1048 GAATTACAAAGCCGAAGGAAGTAAAGAAGTTCAAAGGAGAAGGGATGCCACTTCACTACA 1107
Query 965 GCACAAAGAAAGGGAACCTCTTTGTCACTTTTGAGGTTTTGTTTCCTTCTTCTCTCACTG 1024
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1108 GCACAAAGAAAGGCAACCTCTTTGTCACTTTTGAGGTTTTGTTTCCGTCTTCTCTCACTG 1167
Query 1025 ACGATCAGAAGAAGAAGATTAAAGAAGTCTTTGCTTAGTGctct-ctctc--tttctctc 1081
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||
Sbjct 1168 ACGATCAGAAGAAGAAGATTAAAGAAGTCTTTGCTTAGTGCTCTTCTCTCGCTTTCGCTC 1227
Query 1082 t 1082
|
Sbjct 1228 T 1228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53011775520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5