BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg939357 Length=819 Score E Sequences producing significant alignments: (Bits) Value AT3G62690.1 | Symbols: ATL5 | AtL5 | chr3:23185348-23186701 REV... 1205 0.0 > AT3G62690.1 | Symbols: ATL5 | AtL5 | chr3:23185348-23186701 REVERSE LENGTH=1354 Length=1354 Score = 1205 bits (652), Expect = 0.0 Identities = 761/815 (93%), Gaps = 2/815 (0%) Strand=Plus/Plus Query 5 TCTCTATCTATCTTCAAAACAATGGGAAACATGTTTGACAGTAGCAAGACGATATGGGGA 64 |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 79 TCTCTATCTATCTTCAAAACAATGGGAAACCTGTTTGACAGTAGCAAGACTTTATGGGGA 138 Query 65 AACATGAACCATGGATCGTCACGTTACTCTCTCAACGGCAAAATCATGCTTGCTTCCGTC 124 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 139 AACATGAACCATGGATCGTCACGTTACTCTCTAAACGGCAAAATCATGCTTGCTTCCGTC 198 Query 125 ATCATCCTCTTCGTCGCCGTCATTTTAATCCTCTGTTTCCACAGCTACGCCAGATGGTTG 184 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 199 ATCATCCTCTTCGTCGCCGTCATTTTAATCCTCTGTTTCCACAGCTACGCTAGATGGTTA 258 Query 185 TTCCGCCGTCAAAACCGCCGTATTCGCCGCCGTATCAGTGCTCACCTCCGATCACTTGCC 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 259 TTCCGCCGTCAAAACCGCCGTATTCGCCGCCGTATCAGTGCTCACCTCCGATCACTCGCC 318 Query 245 GCCGCTCGAGACCCCACTCAATCTTCCTCATCTCTATCTCCTCTTGATCCGACGGTGCTC 304 |||||| |||||||||| ||||| || || || || |||||||||||||||||||||||| Sbjct 319 GCCGCTAGAGACCCCACCCAATCATCATCCTCCCTCTCTCCTCTTGATCCGACGGTGCTC 378 Query 305 GAGAAGATCCCGATCTTCGTCTACTCCGCTAAAACCCATGAATCTCCACTGGAGGAGTGC 364 ||||||||||| |||||||||||||||| |||||||||||||||||| || ||||| ||| Sbjct 379 GAGAAGATCCCTATCTTCGTCTACTCCGTTAAAACCCATGAATCTCCGCTTGAGGAATGC 438 Query 365 TCTGTTTGCTTATCGGAGTTTGAAGAAGACGACGAAGGACGTGTCCTTCCCAAATGCGGC 424 ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 439 TCTGTTTGCTTGTCGGAATTCGAAGAAGACGACGAAGGACGTGTCCTTCCCAAATGCGGC 498 Query 425 CACGTGTTCCACGTTGATTGTATCGACACGTGGTTCCGGTCCAGATCAAGTTGTCCTCTT 484 ||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 499 CACGTGTTCCATGTCGATTGTATAGACACGTGGTTCCGGTCCAGATCAAGTTGTCCTCTT 558 Query 485 TGTAGAGCTCCGGTTCAACCCGCACAGCCGGTTACCGAATCCGAACCGGTTGCTGCCGTG 544 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 559 TGTAGAGCTCCGGTTCAACCCGCACAGCCGGTTACCGAACCCGAACCGGTTGCTGCTGTG 618 Query 545 TTCCCATCGGTTAAACCAGTTGAAGATACCGAAGCCGGAAGTTCTTCATCATCGGACGAA 604 || ||||||||||||||| |||| |||||||||||||||||||| || |||||||||||| Sbjct 619 TTTCCATCGGTTAAACCAATTGAGGATACCGAAGCCGGAAGTTCCTCTTCATCGGACGAA 678 Query 605 TCCGAATCCTCGACGCCGTCTTCCTCCTCTGGGTCGCCGGTTAGGTTTCCGATGGAAGCT 664 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 679 TCCGAATCCTCGACGCCGTCTTCCTCCTCTGGTTCGCCGGTGAGGTTTCCGATGGAAGCT 738 Query 665 TGTGAGAGAGCACCGATTGATTTAATCCATATAATTGTGGAGATCCCCAGGGCATTTGAA 724 |||||||||| ||||||||||||| || ||| ||||||||||| ||||||| |||| || Sbjct 739 TGTGAGAGAGAACCGATTGATTTAGTCGGTATCATTGTGGAGATTCCCAGGGAATTTCAA 798 Query 725 GATTCTAATTCGGGTCTACCCGGAGATAACGGGTCGAATAACCGGACTTCATT-ACAAAG 783 ||||||||||||| |||||||| |||||||||||||||| ||| |||| || | |||| Sbjct 799 GATTCTAATTCGGATCTACCCGCAGATAACGGGTCGAATCGTCGGGCTTCGTTGA-AAAG 857 Query 784 GCTATGGAGTATTTGATTACAAAATTGGATAGTGA 818 |||||||| |||||||| ||| ||||||||||||| Sbjct 858 GCTATGGATTATTTGATCACATAATTGGATAGTGA 892 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39885912718 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5