BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939361
Length=988
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62730.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1500 0.0
> AT3G62730.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant
structures; EXPRESSED DURING: LP.04 four leaves visible, 4
anthesis, LP.02 two leaves visible, petal differentiation and
expansion stage; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G47980.1); Has 172 Blast hits to
172 proteins in 41 species: Archae - 0; Bacteria - 73; Metazoa
- 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:23207854-23209471 REVERSE
LENGTH=1138
Length=1138
Score = 1500 bits (812), Expect = 0.0
Identities = 934/992 (94%), Gaps = 11/992 (1%)
Strand=Plus/Plus
Query 4 AGAAACAAAAGG-AAAGCATGTTTAAACTCTGTCTTGTTCTAGTCTTGCTTATTGCAATA 62
||| || ||||| |||||||||||||||||||||| ||||| |||||| |||||||| ||
Sbjct 18 AGAGACGAAAGGAAAAGCATGTTTAAACTCTGTCTCGTTCTCGTCTTGGTTATTGCAGTA 77
Query 63 GATGCAAGTCCGGTTCAGTCCGGTTCTCT-TAGTTGCTCCGGGAATATATCAGCGAGCGA 121
||||||| ||||| | ||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 78 GATGCAAATCCGGCTAAGTCCGGTTCT-TGTAGTTGCTCCGGGAATATATCAGCGAGCGA 136
Query 122 TGTCGATCGAGTTCATTTCGCGCTGAACTTGGAGTTCACCGAGGCCGAGTTCTTCTTGAA 181
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 137 TGTCGATCGAGTTCATTTCGCGATGAACTTGGAGTTCACCGAGGCCGAGTTCTTCTTAAA 196
Query 182 AGGGGCTACCGGAAAAGGACTCGATGCCTATAACGCTACACTTGCTAAAGGCGGACCACC 241
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 197 AGGGGCTACCGGAAAAGGACTTGATGCCTATAACGCGACACTTGCTAAAGGCGGACCACC 256
Query 242 GCCGGTAGGGGCCAAGAAAGCCAATCTTGATCCTATAACTAAACGAATCATCGAGGAGTT 301
|||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 257 GCCGATAGGGGCCAAGAAAGCCAACCTTGATCCTATAACTAATCGAATCATCGAGGAGTT 316
Query 302 TGGTTATCAAGAAGTCGGTCATCTTAGGGCGATTACGGATATGACGGGAGGAATTCCGCG 361
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 317 TGGTTATCAAGAAATCGGTCATCTTAGGGCGATTACGGATATGACGGGAGGAATTCCACG 376
Query 362 TCCGCTAATAAATCTGACGAGAGAAAATTTCGCAGTGTTTATGGACAGAGCGGTTGGACG 421
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 377 TCCGCTAATAAATCTGACGAGAGAGAATTTCGCAGTGTTTATGGATAGAGCGGTTGGACG 436
Query 422 CAGATCTAACCCGCGGTTTGATCCTTATGCCAACTCACTCAATTATCTCTTAGCTTCATA 481
|| |||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 437 CAAATCTAATCCGCGGTTTGATCCTTACGCCAACTCACTCAACTATCTCTTAGCTTCATA 496
Query 482 CTATATCCCTTATGTTGGCCTTACCGGTTATGTCGGAGCCATCCCTTACCTTGTCTACTT 541
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 497 TTATATCCCTTATGTTGGCCTTACCGGTTATGTCGGAACCATCCCTTACCTTGTCTACTT 556
Query 542 CAATATCAAACGGCTAGTGGCGGGTCTACTAGGGGTGGAATCGGGTCAAGACGCAGTGAT 601
|||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 557 CAATATCAAAAAGCTAGTGGCGGGTCTATTGGGGGTGGAATCGGGTCAAGACGCAGTGAT 616
Query 602 AAGGACGCTTCTGTACGAGAGACAGAACGAGACGGTGGAAGAATACGGCGGTGTCACGGT 661
||| ||||||||||||||||||||||| |||| |||||| |||||||| || ||||||||
Sbjct 617 AAGAACGCTTCTGTACGAGAGACAGAATGAGAAGGTGGAGGAATACGGTGGAGTCACGGT 676
Query 662 GGCTGAGCTGACCAATGAGATATCTAACCTCCGTAACGAACTCGGTATGTGCGGGATCAA 721
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 677 GGCTGAGCTGACCAATGAGATATCTAACCTCCGTAATGAACTCGGTATGTGCGGGATCAA 736
Query 722 GGACGAAGGCTTGTGCGTGCCGTTGTGGCTAGGAGCGGAGAATCGCACCACCAGCAACAT 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 GGACGAAGGCTTGTGCGTGCCGTTGTGGCTAGGAGCGGAGAATCGCACCACCAGCAACAT 796
Query 782 TCTCTCTGCTAATCCTTACTCTCTCTCTTATGACCGGACAGCGCAAGAGATCCTCAGGGT 841
||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 797 CCTCTCCGCTGATCCTTACTCTCTCTCTTATGACCGGACAGCACAAGAGATCCTCAGGGT 856
Query 842 TATGTACGGCACCGGCGATGAGCACCGACCCGGCGGGTTTTGGCCGTGTGGTGCCAACGG 901
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 857 TATGTACGGCACCGGTGATGAGCACCGACCTGGCGGGTTTTGGCCGTGTGGTGCCAATGG 916
Query 902 GAGGATCGCTAGGATGTTTCTTGATGAAGGGTGTTATGGTGA-T-T-GCGTT-T--GTTC 955
||||||||||||||||||||||||||||||||||||||||| | | ||||| | ||||
Sbjct 917 AAGGATCGCTAGGATGTTTCTTGATGAAGGGTGTTATGGTGAATATTGCGTTGTATGTTC 976
Query 956 ACATGACAACTAGATA-TTTCCATTGATACAA 986
||||||||| || | | |||||||||||||||
Sbjct 977 ACATGACAATTAAA-AGTTTCCATTGATACAA 1007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48375483561
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5