BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg939382 Length=1296 Score E Sequences producing significant alignments: (Bits) Value AT3G62910.1 | Symbols: APG3 | Peptide chain release factor 1 | ... 2235 0.0 > AT3G62910.1 | Symbols: APG3 | Peptide chain release factor 1 | chr3:23257554-23260427 REVERSE LENGTH=1417 Length=1417 Score = 2235 bits (1210), Expect = 0.0 Identities = 1250/1270 (98%), Gaps = 0/1270 (0%) Strand=Plus/Plus Query 4 CTCTCTAGACTCTAGACAATGAATAGCTCGATGACTACGAGTCCAACGGCTCGAGCCTTC 63 ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 24 CTCTCTAGAGTCTAGACAATGAATAGCTCGATGACGACGAGTCCAACGGCTCGAGCCTTC 83 Query 64 CTTCATCTTCACTCGTCACCATTCACTTTACGTTCTAGGCAGCCACCGGCTGGAGTATGT 123 ||||||||||||||||||||||||||||||||||| || || ||||| ||||||| ||| Sbjct 84 CTTCATCTTCACTCGTCACCATTCACTTTACGTTCGAGAAAGTCACCGTCTGGAGTTTGT 143 Query 124 CTAGTCTCGTGGCCGCCTTCTCCGTCTCGCAGGACTCGACGACTCGTCTGTATGGCCGAA 183 |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 144 CTAGTCTCGTGGCCGCCTTCTCGGTCTCGCAGGACTCGACGACTCGTTTGTATGGCCGAA 203 Query 184 CCTTACCTCATTAGGAAAATGGAGTCTGTGGAGAAGACATGGAAGGAGTTATCGGTAAAA 243 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 204 CCTTACCTCATTAGGAAAATGGAGTCTGTTGAGAAGACATGGAAGGAGTTATCGGTGAAA 263 Query 244 CTAGCTGACCCAGATGTTGTTTCGAATCAATCTGAATACCAAAAACTGGCACAATCCATG 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 264 CTAGCTGACCCAGATGTTGTTTCGAATCAATCTGAATACCAAAAACTGGCACAATCCATG 323 Query 304 TCGGAGCTTGACGAGGTTGTAACAGTCTTCAGAAGATTCAAGGACTGTGAGAAGCAGTTA 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 324 TCGGAGCTTGACGAGGTTGTAACAGTCTTCAGAAGATTCAAGGACTGTGAGAAGCAGTTA 383 Query 364 CTAGAAAGCAAAGTTTTGGCGAAAGAGGCTGGAGATGATGAAGATATGGCTGAAATGATA 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 384 CTAGAAAGCAAAGTTTTGGCGAAAGAGGCTGGAGATGATGAAGATATGGCTGAAATGATA 443 Query 424 GGAAGTGAAATCAACTCGCTCACTAAAGAAATTGAGGAGCTTGAAAAACAACTTAAGGTG 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 444 GGAAGTGAAATCAACTCGCTCACTAAAGAAATTGAGGAGCTTGAAAAACAACTTAAGGTG 503 Query 484 TTACTTCTTCCTTCCGATCCTCTTGATGCCAGAAACATTTTGCTCGAAGTTAGAGCAGGA 543 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 504 TTACTTCTTCCTTCCGATCCTCTTGATGCCAGAAACATTTTGCTTGAAGTTAGAGCAGGA 563 Query 544 ACTGGTGGCGATGAAGCTGCAATTTGGACTGGTGACCTTGTGCGGATGTATCAGAGGTAC 603 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 564 ACTGGTGGCGATGAAGCTGCAATTTGGACTGGTGACCTTGTGCGGATGTATCAGAGGTAC 623 Query 604 AGCGAGCGCAGCTCTTGGAAGTTTTCAATGGTTTCATGCTCAGAGGCTGAACATGGTGGT 663 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 624 AGCGAGCGCAGCTCTTGGAAGTTTTCAATGGTTTCATGCTCAGAGGCTGAACATGGAGGT 683 Query 664 TACAAGACGTGTGTGATGGAGATTAAAGGAAATCGTGTCTATAGCAAGCTCAAGTACGAA 723 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 684 TACAAGACGTGTGTGATGGAGATTAAAGGAAATCGTGTCTATAGCAAGCTCAAGTATGAA 743 Query 724 TCTGGTGTTCATCGAGTCCAGCGTGTTCCTCAAACAGAAACACAGGGTCGTGTACACACT 783 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 744 TCTGGTGTTCATCGAGTCCAGCGTGTTCCTCAAACAGAAACACAGGGTCGTGTACACACT 803 Query 784 TCTACAGCAACTGTAGCCATCATGCCAGAGGCTGATGAAGTGGAAGTGGTGATTGACCCA 843 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 804 TCTACAGCAACTGTAGCCATCATGCCAGAGGCTGATGAAGTGGAAGTGGTGATTGACCCA 863 Query 844 AAGGATATTGAACTTACATCTGCAAGATCTGGCGGCGCTGGAGGGCAAAATGTGAACAAG 903 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 864 AAGGACATTGAACTTACATCTGCAAGATCTGGCGGCGCTGGAGGCCAAAATGTGAACAAG 923 Query 904 GTGGAGACGGCTATAGATCTATTCCACAAACCGTCAGGTATTCGCATTTTCTGTACAGAA 963 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 924 GTGGAGACGGCTATAGATCTATTCCACAAACCGTCAGGTATTCGCATTTTCTGTACAGAA 983 Query 964 GAAAGGACTCAGATTAGGAATAAGGCTCGTGCTTTCCAGCTTCTGCGAGCAAAACTGTAT 1023 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 984 GAAAGGACCCAGATTAGGAATAAGGCGCGTGCTTTCCAGCTTCTGCGAGCAAAACTGTAT 1043 Query 1024 GAAATAAAAGTAAGGGAACAACAAGAGAAGATAAGGAATGAAAGGAAATCTCAGGTTGGG 1083 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1044 GAAATAAAAGTAAGGGAACAACAAGAGAAGATAAGGAATGAAAGGAAATCTCAGGTTGGG 1103 Query 1084 ACTGGAGCTCGTTCAGAAAAGATAAGAACATACAATTATAAGGACAGTAGAGTGACTGAT 1143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1104 ACTGGAGCTCGTTCAGAAAAGATAAGAACATACAATTATAAGGACAGTAGAGTGACTGAT 1163 Query 1144 CATAGGCTAAAGATGAACTTTGCGCTTACATCATTTCTTGACGGTGCTTTAGAGGACGCA 1203 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1164 CATAGGCTAAAGATGAACTTTGCGCTTACAACATTTCTTGACGGTGCTTTAGAGGACGCA 1223 Query 1204 GTGCAGGCTTGTGCTGCTTTGGAGCAAAAGGAACTCATGGAAGAACTCTCCGAGTCTGTA 1263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1224 GTGCAGGCTTGTGCTGCTTTGGAGCAAAAGGAACTCATGGAAGAACTCTCCGAGTCTGTA 1283 Query 1264 GCTGCTTCTT 1273 |||||||||| Sbjct 1284 GCTGCTTCTT 1293 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63754692150 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5