BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg939389 Length=1949 Score E Sequences producing significant alignments: (Bits) Value AT3G62980.1 | Symbols: TIR1 | F-box/RNI-like superfamily protei... 3249 0.0 > AT3G62980.1 | Symbols: TIR1 | F-box/RNI-like superfamily protein | chr3:23273116-23276375 REVERSE LENGTH=2342 Length=2342 Score = 3249 bits (1759), Expect = 0.0 Identities = 1887/1950 (97%), Gaps = 3/1950 (0%) Strand=Plus/Plus Query 1 TCTCGAGGTTATTTGGCCGCAATGCAGAAGCGAATAGCCTTGTCGTTTCCAGAAGAGGTG 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 174 TCTCGAGGTTATTTGGCCGCAATGCAGAAGCGAATAGCCTTGTCGTTTCCAGAAGAGGTA 233 Query 61 CTTGAGCATGTATTCTCGTTTATTCAGCAGGATAAGGATAGGAACTCGGTCTCTCTGGTG 120 || |||||||| |||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct 234 CTAGAGCATGTGTTCTCGTTTATTCAGCTGGATAAGGATAGGAACTCAGTCTCTCTGGTG 293 Query 121 TGCAAGTCATGGTACGAGATCGAGCGTTGGTGCAGGAGGAAAGTCTTCATCGGGAACTGT 180 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 294 TGCAAGTCATGGTACGAGATCGAGCGGTGGTGCAGGAGGAAAGTCTTCATCGGGAACTGC 353 Query 181 TACGCCGTGAGTCCAGCGACGGTGATTAGGAGGTTCCCGAAAGTGAGATCCGTGGAGCTC 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 354 TACGCCGTGAGTCCAGCGACGGTGATTAGGAGGTTCCCGAAAGTGAGATCCGTGGAGCTT 413 Query 241 AAGGGGAAACCTCACTTTGCTGACTTTAATTTGGTACCCGACGGATGGGGAGGTTACGTG 300 || || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 414 AAAGGAAAACCTCACTTTGCTGACTTTAATTTGGTACCTGACGGATGGGGAGGTTACGTG 473 Query 301 TATCCATGGATTGAGGCCATGTCGTCGTCTTACACGTGGCTTGAAGAGATAAGGCTGAAG 360 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 474 TATCCATGGATTGAGGCCATGTCTTCGTCTTACACGTGGCTTGAAGAGATAAGGCTGAAG 533 Query 361 AGGATGGTGGTGACCGACGATTGCTTGGAGCTCATAGCCAAGTCCTTTAAGAATTTCAAG 420 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 534 AGGATGGTGGTCACCGACGATTGCTTGGAGCTCATAGCCAAGTCTTTTAAGAATTTTAAG 593 Query 421 GTTCTTGTGCTTTCTTCCTGCGAAGGCTTCTCCACCGATGGTCTCGCTGCTATCGCTGCC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 594 GTTCTTGTGCTTTCTTCCTGCGAAGGCTTCTCCACCGATGGTCTCGCTGCTATCGCTGCC 653 Query 481 ACTTGCAGGAATCTGAAAGAGCTTGATTTACGCGAGAGTGAGGTTGACGATGTTAGTGGC 540 |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||| Sbjct 654 ACTTGCAGGAATCTGAAAGAGCTTGACTTACGAGAGAGTGATGTTGACGACGTTAGTGGC 713 Query 541 CATTGGCTTAGCCATTTCCCAGATACTTACACATCTTTGGTATCACTCAATATCTCTTGC 600 || ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| Sbjct 714 CACTGGCTTAGCCATTTCCCAGATACATACACTTCTTTGGTATCACTCAATATATCTTGC 773 Query 601 TTAGCATCTGAGGTCAGTTTTTCTGCTCTGGAAAGGCTGGTGACTAGGTGTCCCAATCTC 660 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 774 TTAGCATCTGAGGTCAGTTTCTCTGCTCTGGAAAGGCTGGTGACTAGGTGTCCCAATCTC 833 Query 661 AAGTCTCTCAAGCTTAACCGATCTGTTCCCCTTGAAAAATTGGCTACTTTAATTCAAAGA 720 ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| Sbjct 834 AAGTCTCTCAAGCTTAACCGAGCTGTTCCACTTGAAAAATTGGCTACTTTACTTCAAAGA 893 Query 721 GCTCCTCAATTGGAGGAATTGGGCACTGGTGGGTACACTGCAGAAGTCCGACCAGATGTT 780 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 894 GCACCTCAATTGGAGGAATTGGGCACTGGTGGGTACACTGCAGAAGTGCGACCAGATGTT 953 Query 781 TATTCTGGTTTATCTGTAGCGCTCTCTGGATGCAAGGATTTGAAGTGCTTATCTGGATTT 840 || |||||||||||||||||||||||||| |||||||| |||| |||||||||||||||| Sbjct 954 TACTCTGGTTTATCTGTAGCGCTCTCTGGGTGCAAGGAATTGAGGTGCTTATCTGGATTT 1013 Query 841 TGGGATGCTGTTCCTGCCTATCTTCCAGCTGTTTATTCAGTTTGCAGTCGGCTTACAACT 900 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 1014 TGGGATGCTGTTCCTGCCTATCTTCCAGCAGTTTATTCGGTTTGCAGTCGGCTTACAACT 1073 Query 901 TTGAATCTGAGTTATGCAACAGTCCACAGCTATGATCTTGTCAAGCTACTTAGTCAATGC 960 |||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||| Sbjct 1074 TTGAATCTGAGTTATGCAACAGTCCAGAGCTATGATCTTGTCAAGCTTCTTTGTCAATGC 1133 Query 961 CCAAAACTGCAGCGCCTCTGGGTGCTTGACTACATTGAGGATGCTGGTCTTGAGGTGCTT 1020 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1134 CCTAAACTGCAGCGCCTCTGGGTGCTTGACTACATCGAGGATGCTGGTCTTGAGGTGCTT 1193 Query 1021 GCTTCAACCTGCAAGGACCTACGCGAGCTCAGAGTGTTTCCGTCTGAGCCTTTTGTCATG 1080 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 1194 GCTTCAACCTGCAAGGACCTACGCGAGCTGAGAGTGTTTCCGTCCGAGCCTTTTGTCATG 1253 Query 1081 GAACCAAATGTGGCATTGACGGAACAGGGGCTTGTCTCCGTCTCCATGGGCTGTCCAAAA 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1254 GAACCAAATGTGGCATTGACGGAACAGGGGCTTGTCTCCGTCTCCATGGGCTGTCCAAAA 1313 Query 1141 CTCGAGTCGGTTCTCTACTTCTGCCGTCAAATGACCAATGCTGCATTGATAACCATTGCT 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1314 CTCGAGTCGGTTCTCTACTTCTGCCGTCAAATGACCAATGCTGCATTGATAACCATTGCT 1373 Query 1201 AGGAACCGTCCCAACATGACTCGCTTCCGCTTGTGCATCATTGAGCCAAAAGCTCCAGAC 1260 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 1374 AGGAACCGTCCCAACATGACTCGCTTCCGTTTGTGCATCATTGAGCCAAAAGCCCCAGAC 1433 Query 1261 TATCTGACTCTAGAGCCACTGGATGTTGGATTTGGAGCCATAGTAGAGCACTGCAAAGAT 1320 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 1434 TATCTGACTCTAGAGCCACTGGATATTGGATTTGGAGCCATAGTAGAGCACTGCAAGGAT 1493 Query 1321 CTCCGTCGCCTCTCTCTATCTGGCCTCTTGACCGACAAGGTTTTTGAATACATTGGGACA 1380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1494 CTCCGTCGCCTCTCTCTATCTGGCCTCTTGACCGACAAGGTTTTTGAATACATTGGGACA 1553 Query 1381 TATGCCAAGAAGATGGAAATGCTCTCAGTGGCATTTGCAGGAGACAGTGACTTAGGCATG 1440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1554 TATGCCAAGAAGATGGAAATGCTCTCAGTGGCATTTGCAGGAGACAGTGACTTAGGCATG 1613 Query 1441 CATCATGTTTTGTCGGGGTGCGATAGCCTGAGGAAACTAGAGATAAGGGACTGCCTGTTT 1500 |||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||| Sbjct 1614 CATCATGTTTTGTCCGGGTGCGATAGCTTGAGGAAACTAGAGATAAGGGACTGCCCGTTT 1673 Query 1501 GGAGACAAGGCGCTTTTGGCCAATGCTTCAAAGCTGGAGACAATGCGATCCCTTTGGATG 1560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1674 GGAGACAAGGCGCTTTTGGCCAATGCTTCAAAGCTGGAGACAATGCGATCCCTTTGGATG 1733 Query 1561 TCTTCTTGTTCCGTGAGTTTTGGAGCCTGCAAGTTATTAGGACAGAAGATGCCAAAGCTG 1620 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1734 TCTTCTTGTTCCGTGAGTTTTGGAGCCTGCAAGTTACTAGGACAGAAGATGCCAAAGCTG 1793 Query 1621 AATGTGGAAGTCATCGATGAACGGGGTCCACCGGACTCGAGACCAGAGAGCTGCCCTGTG 1680 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1794 AATGTGGAAGTCATCGATGAACGGGGTGCACCGGACTCGAGACCAGAGAGCTGCCCTGTT 1853 Query 1681 GAGAGAGTGTTCATTTACCGAACAGTGGCAGGTCCTCGGTTTGACATGCCTGGCTTCGTC 1740 |||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 1854 GAGAGAGTCTTCATATACCGAACAGTGGCTGGTCCTCGATTTGACATGCCTGGCTTCGTC 1913 Query 1741 TGGAACATGGACCAAGACTCAACAATGAGGTTT-CCAGGAAAATCATCACTACTAACGGA 1799 ||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||| Sbjct 1914 TGGAACATGGACCAAGACTCAACAATGAGGTTTTCCAGGCAAATCATTACTACTAACGGA 1973 Query 1800 TTATAAGACAAATAAACGAGGTACATTTTTCATTAATCCTTGTTCATCATCCCATATAAT 1859 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1974 TTATAAGACAAAGAAACGAGGTACATTTTTCATTAATCCTTGTTCATCATCCCATATAAT 2033 Query 1860 CGTGTTCCGGTTTAGGAACATGAGAGAGCTCTCGGTCGCCAATAATTTGATTCTCGGCTG 1919 ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 2034 CGTGTTCCGGTTTAGGAACATGAGAGAGCTC--GGTCGCCAATAATTTGAATCTCGGCTG 2091 Query 1920 CTTCATATAACCATCAAGCTCATGAGCAAT 1949 |||||||||||||||||||||||||||||| Sbjct 2092 CTTCATATAACCATCAAGCTCATGAGCAAT 2121 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 96535648035 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5