BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg939394 Length=589 Score E Sequences producing significant alignments: (Bits) Value AT3G63030.1 | Symbols: MBD4 | methyl-CPG-binding domain 4 | chr... 717 0.0 > AT3G63030.1 | Symbols: MBD4 | methyl-CPG-binding domain 4 | chr3:23295343-23296597 FORWARD LENGTH=784 Length=784 Score = 717 bits (388), Expect = 0.0 Identities = 517/578 (89%), Gaps = 14/578 (2%) Strand=Plus/Plus Query 14 AAGTGAGATGGAGG--CA-GACGAGATCGCAAAACCAGCGAAACCAAAAGCCAAGAAAGA 70 |||||||||| ||| | || ||||||| |||||||||||||||||||||||||||||| Sbjct 45 AAGTGAGATGAAGGAAGAGGAGGAGATCGGAAAACCAGCGAAACCAAAAGCCAAGAAAGA 104 Query 71 CACTGCGCCAGGGAGGTTGATCGATACCTATGCTGCACAATGCGAAAACTGTCACAAGTG 130 ||| || ||||||||||| ||||||||||||||||| ||||| |||||||||||||| Sbjct 105 TGTTGCTCCTGGGAGGTTGATTGATACCTATGCTGCACAGTGCGATAACTGTCACAAGTG 164 Query 131 GAGGGTGATTGATAGCCAAGAGGAGTATGAGGATATCAGAAGTAAAATGCTTGAGGACCC 190 |||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||| || Sbjct 165 GAGGGTGATTGATAGCCAGGAGGAATATGAAGATATCAGAAGTAAAATGCTCGAGGATCC 224 Query 191 TTTTAACTGTCAGAAGAAACAGGGCATGTCCTGTGAAGAGCCTGCTGATCTTGACTATGA 250 |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| || Sbjct 225 TTTTAACTGTCAGAAGAAACAGGGCATGTCTTGTGAAGAGCCTGCTGATATTGACTACGA 284 Query 251 TTCCTCAAGGACTTGGGTCATCGACAAGCCTGGTCTCCCCAAAACGCCTCAAGGTTTCAG 310 ||| || ||||||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 285 TTCTTCTCGGACTTGGGTCATTGACAAGCCTGGTCTCCCCAAAACGCCTAAAGGTTTCAA 344 Query 311 GAGGAGCTTAGTCCTCAGGAAAGACTACTCTAAGATGGATACCTACTATTTTACTCCAAC 370 ||| |||||||| ||||| ||||| ||||||||||||||||||||||| |||||||| || Sbjct 345 GAGAAGCTTAGTTCTCAGAAAAGATTACTCTAAGATGGATACCTACTACTTTACTCCTAC 404 Query 371 CGGGAAGAAGCTGAGGAGTCGCAATGAAATCGCAGCCTTTGTTGAAGCCAATCCGGAATT 430 |||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 405 CGGGAAGAAGCTCAGGAGTCGCAATGAAATCGCTGCCTTCGTTGAAGCCAATCCGGAATT 464 Query 431 CAAGAACGCACCCCTCGGAGACTTCAATTTTACTGTCCCCAAGGTCATGGAAGATACTGT 490 || ||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 465 CAGGAACGCACCACTTGGAGACTTCAATTTCACTGTCCCCAAGGTCATGGAAGATACTGT 524 Query 491 TCCTCCTGATCCTAAGCTTGCCTCTCCTATT--------T-CTACCACTACTACAGAGAA 541 ||| |||||||| ||||||| ||||||| || | ||||||||||| ||||||| Sbjct 525 TCCCCCTGATCCGAAGCTTGGCTCTCCTTTTCCAAGCACTACTACCACTACTTCAGAGAA 584 Query 542 GAGCAGTTTCAAGCAGATCCA-AGGCTAATATGTTCTC 578 ||||||| ||||||||| ||| | ||||||||||||| Sbjct 585 GAGCAGTGTCAAGCAGAGCCATAA-CTAATATGTTCTC 621 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28332058908 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5