BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939405
Length=1051
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63110.1 | Symbols: ATIPT3, IPT3 | isopentenyltransferase 3 ... 1600 0.0
> AT3G63110.1 | Symbols: ATIPT3, IPT3 | isopentenyltransferase
3 | chr3:23318076-23319540 REVERSE LENGTH=1465
Length=1465
Score = 1600 bits (866), Expect = 0.0
Identities = 986/1046 (94%), Gaps = 0/1046 (0%)
Strand=Plus/Plus
Query 1 ATACTGCAAAGCGCTTCATCATGATCATGAAGGTATCTATGGCTATGTGCAAACTACCAT 60
||| ||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 74 ATATTGCAAAGCGTTTCATCATGATCATGAAGATATCTATGGCTATGTGCAAACAACCAT 133
Query 61 TGCCTCCTTCGCCGGCGTTAGACTTCCCTCCTGCGAGATTTGGTCCCAATATGCTATCTC 120
|||||||||||||| | |||||||||||||| |||||||||||||||||||||||| |||
Sbjct 134 TGCCTCCTTCGCCGACTTTAGACTTCCCTCCAGCGAGATTTGGTCCCAATATGCTAACTC 193
Query 121 TAAACCCATTTGGTCCAAAGGACAAAGTTGTGGTCATAATGGGTGCTACCGGAACAGGCA 180
||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 194 TAAACCCATACGGTCCAAAGGACAAAGTTGTGGTCATCATGGGTGCTACCGGGACAGGCA 253
Query 181 AGTCAAGACTCTCCGTCGATATAGCCACACGTTTTCGGGCTGAGATAATAAATTCCGACA 240
||||| |||||||||| ||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 254 AGTCACGACTCTCCGTGGATATAGCCACACGTTTTCGGGCTGAGATCATAAACTCAGACA 313
Query 241 AGATCCAAGTCCACCAAGGTCTAGACATTGTCACCAACAAGATCACGAGCGAGGAGAGCT 300
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 314 AGATACAAGTCCACCAAGGTCTAGACATTGTAACCAACAAGATCACGAGCGAGGAGAGCT 373
Query 301 GCGGGGTACCGCATCATCTCCTCGGCGTCTTGCCGCCTGAAGCGGACTTAACCGCCCCGA 360
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 374 GCGGGGTACCGCACCATCTCCTCGGCGTCTTGCCGCCTGAAGCCGACTTAACCGCCGCGA 433
Query 361 ATTACTGTCACATGGCGAATCTCTCCATTGAATCCATCCTAAACCGGGGAAAGCTTCCAA 420
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 434 ATTACTGTCACATGGCGAATCTCTCCATTGAATCCGTCCTAAACCGTGGAAAGCTTCCAA 493
Query 421 TCATCGTTGGAGGTTCTAACTCTTACGTGGAGGCTCTAGTGGATGACGAAGACAACAAAT 480
|||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| |
Sbjct 494 TCATCGTTGGAGGTTCCAACTCTTACGTGGAGGCTCTAGTGGATGACAAAGAAAACAAGT 553
Query 481 TCAGGTCCAGATACGACTGTTGTTTTCTATGGGTCGACGTGGCACTTCCCGTTTTGCATG 540
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 554 TCAGGTCGAGATACGACTGTTGTTTTCTATGGGTGGACGTGGCACTTCCCGTTTTGCACG 613
Query 541 GGTTCGTGTCTGAGAGGGTTGACAAGATGGTAGAAAATGGAATGGTTGAGGAAGTTAGAG 600
|||||||||||||||| |||||||||||||| || | |||||||||||||||||| ||||
Sbjct 614 GGTTCGTGTCTGAGAGAGTTGACAAGATGGTGGAGAGTGGAATGGTTGAGGAAGTCAGAG 673
Query 601 AtttttttGACTTTTCGGATTCTGATTACTCAAGAGGGATCAAGAAAGCAATCGGAGTTC 660
| ||||| ||||||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 674 AATTTTTCGACTTTTCGAACTCTGATTACTCAAGAGGGATCAAGAAAGCAATCGGATTTC 733
Query 661 CAGAGTTTGACAGGTTTTTCAGGAACGAGCAGTTCTTGAATGTGGAAGACAGGGAAGAAC 720
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 734 CGGAGTTTGACAGGTTTTTCAGGAACGAGCAGTTCTTGAATGTGGAAGACAGAGAAGAAC 793
Query 721 TGTTAATTAAAGTGGTCGAAGACATAAAGAGGAACACATTTGAGTTAGCTTGTAGGCAGA 780
|||||| ||||||| | ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 794 TGTTAAGTAAAGTGTTGGAAGAAATAAAGAGGAATACATTTGAGTTAGCTTGTAGGCAGA 853
Query 781 GAGAAAAGATCGAACGGTTGAGAAAAGTGAAGAAGTGGTCCATTCAGAGAGTGGATGCGA 840
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 854 GAGAAAAGATCGAACGGTTGAGAAAAGTGAAGAAGTGGTCTATTCAGAGAGTGGATGCGA 913
Query 841 CTCCGGTCTTTACAAAGCGCAGGTCCAAGACGGATGCTGACGTGGCCTGGGAGAAGCTCG 900
|||| |||||||||||||| |||||||||| ||||||| ||||||||||||||| |||||
Sbjct 914 CTCCAGTCTTTACAAAGCGAAGGTCCAAGATGGATGCTAACGTGGCCTGGGAGAGGCTCG 973
Query 901 TGGCTGGACCAAGCACCGATACTGTGTCGCGGTTTCTGCTGGACATTGCCAGCCGTCGGC 960
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 974 TGGCTGGACCAAGCACAGATACTGTGTCGCGGTTTCTGCTGGACATTGCCAGCCGACGAC 1033
Query 961 CGCTCGTGGAAGCTTCAACCGCCGTTGCGGCGGCCATGGAACGCGAGTTGTCGCGGTGTC 1020
||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 1034 CGCTCGTGGAAGCTTCAACAGCGGTTGCGGCCGCCATGGAACGCGAGTTGTCGCGGTGTC 1093
Query 1021 TAGTGGCGTGATCAGTTGTAACCACG 1046
||||||||||||||||||||||||||
Sbjct 1094 TAGTGGCGTGATCAGTTGTAACCACG 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51540234822
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5