BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939414
Length=871
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63190.1 | Symbols: RRF, HFP108, cpRRF, AtcpRRF | ribosome r... 1426 0.0
> AT3G63190.1 | Symbols: RRF, HFP108, cpRRF, AtcpRRF | ribosome
recycling factor, chloroplast precursor | chr3:23342582-23344773
REVERSE LENGTH=1240
Length=1240
Score = 1426 bits (772), Expect = 0.0
Identities = 838/871 (96%), Gaps = 0/871 (0%)
Strand=Plus/Plus
Query 1 CTTCACCTCTACGGCTACTGCCATGGCTGCTTCATTCTCTTCCACTGCTCCCACGACTCC 60
|||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 112 CTTCACTTCTACGGCTACTGCCATGGCGGCTTCTTTCTCTTCCACTGCTCCCACGACACC 171
Query 61 GGTTCTTCAATTCAGAGCGAACTACTCCAAGTCTTTCCTCTCTCTCCCAGATTCGTGTTT 120
|||||||| ||||||||| |||||||||||| || |||||||||||||||||||||||||
Sbjct 172 GGTTCTTCGATTCAGAGCCAACTACTCCAAGCCTCTCCTCTCTCTCCCAGATTCGTGTTT 231
Query 121 GAGGATAATCGCTTCGGCGAGATGTCCCTCTGCACGCTTAATTGCGTGTTCGTTAAAGAC 180
|||||||||| ||||||||| || ||||||| |||||||||||||||||||||| |||||
Sbjct 232 GAGGATAATCTCTTCGGCGATATCTCCCTCTACACGCTTAATTGCGTGTTCGTTCAAGAC 291
Query 181 CGACAAGCTTCCGCTCGGTGCCGGCGTCAGTCTCTCCCGTGGCCCCGTTGTCAAGCGGTC 240
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||
Sbjct 292 AGACAAGCTTCCGCTCGGTGCCGGCGTCAATCTCTCCGGTGGCCCCGTTGTCAAGCGCTC 351
Query 241 TCTACAGAAGAGATTGGTGATAAGGTCTGCTACTATTGAAGAAATAGAAGCAGAGAAGTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 TCTACAGAAGAGATTGGTGATAAGGTCTGCTACTATTGAAGAAATAGAAGCAGAGAAGTC 411
Query 301 TGCTATTGAGACTGATGTTAAATCAAAGATGGAGAAGACCATTGAAACGCTTCGGACGAG 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 412 TGCTATTGAGACTGATGTTAAATCAAAGATGGAGAAGACTATTGAAACGCTTCGGACGAG 471
Query 361 TTTCAACTCCATAAGGACTGGGAGATCCAATGCGGCAATGCTTGACAAGATTGAGGTGGA 420
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 472 TTTCAACTCCATAAGGACTGGGAGATCCAATGCAGCGATGCTTGACAAGATTGAGGTGGA 531
Query 421 ATACTATGGAAGTCCAGTAAGTTTGAAAAGCATTGCCCAAATCAGTACCCCCGATGGGAG 480
||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||
Sbjct 532 ATACTATGGAAGTCCAGTAAGTTTGAAAAGCATAGCCCAAATCAGTACTCCGGATGGAAG 591
Query 481 TTCTCTTTTGCTGCAACCATATGACAAATCCAGCTTGAAGGCTATAGAGAAGGCTATTGT 540
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 592 TTCTCTTTTGCTGCAACCATATGACAAATCCAGCTTGAAGGCTATAGAGAAAGCCATTGT 651
Query 541 GAATTCTGATCTTGGAGTGACCCCTAATAACGATGGAGATGTCATTCGACTGTCCTTGCC 600
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 652 GAATTCTGATCTTGGTGTGACCCCTAATAACGATGGAGATGTTATTCGACTGTCCTTGCC 711
Query 601 TCCCCTCACATCTGAGAGAAGAAAGGAACTATCAAAGGTTGTTGCAAAACAGTCTGAAGA 660
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 712 TCCCCTCACATCTGACAGAAGAAAGGAACTATCAAAGGTTGTTGCTAAACAGTCTGAAGA 771
Query 661 AGGGAAGGTTGCACTGAGGAACATTAGGAGAGATGCCTTGAAATCTTATGATAAACTCGA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 AGGGAAGGTTGCACTGAGGAACATTAGGAGAGATGCCTTGAAATCTTATGATAAACTCGA 831
Query 721 AAAGGAGAAGAAGCTCTCAGAAGACAACGTGAAGGATTTGTCAAGTGATTTGCAGAAACT 780
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 GAAGGAGAAGAAGCTGTCAGAAGACAACGTGAAGGATTTGTCAAGTGATTTGCAGAAACT 891
Query 781 AATTGATGTATACATGAAGAAGATAGAGGAGCTCTACAAACAGAAAGAGAAGGAATTGAT 840
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 892 AATTGATGTATACATGAAGAAGATAGAGGAGCTCTACAAACAGAAAGAAAAGGAATTGAT 951
Query 841 GAAGGTGTGACCATAATGGTTGTTAGGGGAG 871
|||||||||||||||||||||||||||||||
Sbjct 952 GAAGGTGTGACCATAATGGTTGTTAGGGGAG 982
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42498088362
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5