BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939440
Length=1055
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63410.1 | Symbols: APG1, VTE3, IEP37, E37 | S-adenosyl-L-me... 1712 0.0
> AT3G63410.1 | Symbols: APG1, VTE3, IEP37, E37 | S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein
| chr3:23415589-23417119 REVERSE LENGTH=1361
Length=1361
Score = 1712 bits (927), Expect = 0.0
Identities = 1011/1051 (96%), Gaps = 7/1051 (1%)
Strand=Plus/Plus
Query 10 GATCTGACATCGATGGCTTCTTCGTTGCTCAACGGGGCCATTACCTTCCCCAAGGGTTTA 69
|||||| |||||||||| |||| | |||||||||||||||||||||||||||| ||||||
Sbjct 106 GATCTGTCATCGATGGCCTCTTTGATGCTCAACGGGGCCATTACCTTCCCCAAAGGTTTA 165
Query 70 GGTTTCCCC-GGTTCCAATTTGCATGCCAGATCGATTCCTCGGCCGACTTTACTCTCAGT 128
|| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 166 GG-TTCCCCTGGTTCCAATTTGCATGCCAGATCGATTCCTCGGCCGACCTTACTCTCAGT 224
Query 129 CACCCGAACCACCACACCTAGACTCTCGGTGGCAACTAGAT---GCAGCAGC-GTGTCGT 184
||||||||| |||||||||||||||||||||| ||||||| |||||||| | || ||
Sbjct 225 TACCCGAACCTCCACACCTAGACTCTCGGTGGCTACTAGATGCAGCAGCAGCAGCGT-GT 283
Query 185 CGTCTTCCCGGCCATCGGCGCAACCTAGGTTCATTCAGCACAAAAAGGAGGCTTACTGGT 244
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 284 CGTCTTCCCGGCCATCGGCGCAACCTAGGTTCATTCAGCACAAGAAGGAGGCTTACTGGT 343
Query 245 TCTACAGGTTCTTATCCATCGTATACGACCATGTCATCAATCCTGGGCATTGGACCGAGG 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 TCTACAGGTTCTTATCCATCGTATACGACCATGTCATCAATCCTGGGCATTGGACCGAGG 403
Query 305 ATATGAGGGACGACGCTCTGGAGCCGGCGGATCTCAGCCATCCCGACATGCGCGTGGTCG 364
||||||| ||||||||||| ||||| ||||||||||||||||| |||||||| |||||||
Sbjct 404 ATATGAGAGACGACGCTCTTGAGCCAGCGGATCTCAGCCATCCGGACATGCGAGTGGTCG 463
Query 365 ATGTCGGCGGCGGCACTGGTTTCACTACTCTGGGCATAGTCAAGACTGTGAAGGCTAAGA 424
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 464 ATGTCGGCGGCGGAACTGGTTTCACTACTCTGGGCATAGTCAAGACAGTGAAGGCCAAGA 523
Query 425 ATGTCACCATTCTGGACCAGTCGCCACATCAGCTGGCCAAAGCGAAGCAAAAGGAGCCGT 484
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 524 ATGTGACCATTCTGGACCAGTCGCCACATCAGCTGGCCAAAGCAAAGCAAAAGGAGCCGT 583
Query 485 TGAAAGAATGCAAGATCGTCGAGGGAGATGCTGAGGATCTTCCTTTCCCCACCGATTATG 544
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 584 TGAAAGAATGCAAGATCGTCGAGGGAGATGCTGAGGATCTTCCTTTTCCAACCGATTATG 643
Query 545 CAGACAGATACGTTTCTGCTGGAAGCATTGAGTACTGGCCCGACCCGCAGAGGGGAATAA 604
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 644 CTGACAGATACGTTTCTGCTGGAAGCATTGAGTACTGGCCGGACCCGCAGAGGGGAATAA 703
Query 605 GGGAAGCCTACAGGGTTCTCAAGATCGGTGGCAAAGCGTGTCTCATCGGCCCTGTCTACC 664
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 GGGAAGCGTACAGGGTTCTCAAGATCGGTGGCAAAGCGTGTCTCATCGGCCCTGTCTACC 763
Query 665 CAACCTTCTGGCTCTCTCGCTTCTTTGCTGATGTATGGATGCTCTTCCCCAAGGAGGAAG 724
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 764 CAACCTTCTGGCTCTCTCGCTTCTTTTCTGATGTCTGGATGCTCTTCCCCAAGGAGGAAG 823
Query 725 AGTACATTGAGTGGTTCAAGAATGCCGGTTTCAAGGACGTTCAGCTCAAGAGGATTGGCC 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 AGTACATTGAGTGGTTCAAGAATGCCGGTTTCAAGGACGTTCAGCTCAAGAGGATTGGCC 883
Query 785 CCAAGTGGTACCGTGGTGTTCGCAGGCACGGCCTTATCATGGGATGTTCTGTCACTGGTG 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 CCAAGTGGTACCGTGGTGTTCGCAGGCACGGCCTTATCATGGGATGTTCTGTCACTGGTG 943
Query 845 TTAAACCTGCCTCCGGTGACTCTCCTCTCCAGCTTGGTCCAAAGGAAGAGGACGTAGAAA 904
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 944 TTAAACCTGCCTCCGGTGACTCTCCTCTCCAGCTTGGTCCAAAGGAAGAGGACGTAGAGA 1003
Query 905 AGCCTGTCAACAACCCCTTCTCCTTCTTGGGACGCTTCCTCCTGGGAACTCTAGCAGCTG 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 AGCCTGTCAACAACCCCTTCTCCTTCTTGGGACGCTTCCTCCTGGGAACTCTAGCAGCTG 1063
Query 965 CCTGGTTTGTGCTAGTCCCGATCTACATGTGGATCAAGGATCAGATCGTTCCCAAAGACC 1024
||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 CCTGGTTTGTGTTAATCCCTATCTACATGTGGATCAAGGATCAGATCGTTCCCAAAGACC 1123
Query 1025 AACCCATCTGATCCGTCTCTTCTAGGACATG 1055
|||||||||||||| ||||||||||||||||
Sbjct 1124 AACCCATCTGATCCTTCTCTTCTAGGACATG 1154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51741171410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5