BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg939449 Length=1077 Score E Sequences producing significant alignments: (Bits) Value AT3G63490.1 | Symbols: | Ribosomal protein L1p/L10e family | c... 1618 0.0 > AT3G63490.1 | Symbols: | Ribosomal protein L1p/L10e family | chr3:23444203-23446355 FORWARD LENGTH=1442 Length=1442 Score = 1618 bits (876), Expect = 0.0 Identities = 1029/1097 (94%), Gaps = 34/1097 (3%) Strand=Plus/Plus Query 1 GAAAGAAAGAGAGCTCCAAGAATGGCTGCCTGCGCCACTCACTCCTCTCTCATGCTAGCA 60 ||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||| Sbjct 46 GAAAGAAAGAGAGCTCCAACAATGGCTGCTTGCGCTACTCACTCCTCTCTCATGCTAGCA 105 Query 61 TA---CGCCG------CTCGTTCCCAGGACCTTAcccccccTACTCCATCTCTTTTCTCT 111 || ||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 106 TACGCCGCCGCATCCACTCGTTCCCAGGACCTTA---CCCCTACTCCATCTCTTTTCTCT 162 Query 112 TTTGCCAGCTCTAGACCCAACCACTTGAGCGTCCCGCTTCTTCTCCTTGGGGGTTCCAGG 171 ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 163 TTTGCCAGCTCCAGACCCAACCACTTGAGCTTCCCGCTTCTTCTCCTTGGGGGTTCCAGG 222 Query 172 GACCGCAGA-----TG----TGACAGAGCTTCCAACCGAGCTTTCCAGGTTATTGTCTCC 222 ||||| ||| || ||||||||||||||||| | | || ||||||||||| Sbjct 223 GACCGGAGATGTGCTGCTATTGACAGAGCTTCCAACC-A-----CAAGTTTATTGTCTCC 276 Query 223 GCCGTGGCCGCTGAGGCTGACCTCGACACCGAGGAAGACGACCTGGAGCAGACCGCCACC 282 ||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||| Sbjct 277 GCCGTGGCCGCTGAGGCTGACCTCGACACGGAGG-AG--GACCTGGAGCAGACCGCCACC 333 Query 283 GCCGTCCTTGATCCGCCCAAGCCTAAGAAAGGAAAAGCCGCTTTGGTTCTCAAGAGAGAC 342 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 334 GCCGTCCTTGATCCGCCCAAGCCTAAGAAAGGAAAAGCCGCTTTGGTTCTCAAGAGAGAT 393 Query 343 AGAACAAGGTCTAAGAGGTTTTTGGAAATCCAAAAGCTAAGGGAAACCAAAAAGGAGTAT 402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 394 AGAACAAGGTCTAAGAGGTTTTTGGAAATCCAAAAGCTAAGGGAAACCAAAAAGGAGTAT 453 Query 403 GATGTCATCACTGCTATATCTTTGCTTAAACAAACTGCCAACACCAGGTTTGTTGAGTCT 462 ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 454 GATGTCAACACTGCTATCTCTTTGCTTAAACAAACTGCCAACACAAGGTTTGTTGAGTCT 513 Query 463 GTTGAAGCCCATTTCCGTCTCAACATCGATCCAAAGTACAATGACCAGCAGCTGCGTGCT 522 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 514 GTTGAAGCCCATTTCCGTCTCAACATCGATCCTAAGTACAATGACCAGCAGCTGCGTGCA 573 Query 523 ACGGTGAGCCTGCCTAAGGGAACTGGCCAGACTGTTATAGTCGCTGTTCTTGCACAAGGT 582 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 574 ACGGTGAGCCTGCCTAAGGGAACTGGCCAGACTGTTATAGTCGCTGTTCTTGCACAAGGT 633 Query 583 GAGAAGGTCGATGAAGCCAAAAATGCAGGGGCAGATATTGTGGGCAGTGATGATTTAATC 642 |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 634 GAGAAGGTTGATGAAGCCAAAAGTGCAGGGGCAGATATTGTGGGCAGTGATGATTTAATC 693 Query 643 GAACAGATTAAAGGAGGCTTCATGGAGTTTGATAAGTTGATTGCATCCCCGGATATGATG 702 |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 694 GAACAGATTAAAGGAGGCTTCATGGAGTTTGACAAGCTGATTGCATCCCCGGATATGATG 753 Query 703 GTCAAGGTTGCTGGCCTGGGAAAGATTCTTGGCCCACGCGGACTCATGCCAAATCCCAAG 762 |||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct 754 GTCAAGGTTGCTGGCCTGGGAAAGATTCTTGGACCACGGGGGCTCATGCCAAATCCCAAG 813 Query 763 GCTGGTACGGTCACAGCTAACATTCCCCAGGCTATTGAAGAGTTCAAGAAGGGGAAAGTT 822 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 814 GCTGGTACAGTCACAGCGAACATTCCCCAGGCTATTGAAGAGTTCAAGAAGGGGAAAGTT 873 Query 823 GAATTCAGAGCAGACAAAACTGGGATTGTTCACATTCCCTTTGGGAAAGTTAATTTTACA 882 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 874 GAATTCAGAGCAGACAAAACTGGGATTGTTCACATTCCATTTGGGAAAGTTAATTTTACA 933 Query 883 GAGGAAGACCTTCTCATAAACTTCCTTGCAGCAGTGAAATCGGTGGAGACAAACAAGCCA 942 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 934 GAGGAAGACCTTCTCATAAACTTCCTTGCAGCAGTGAAATCGGTGGAGACAAACAAGCCA 993 Query 943 AAGGGAGCAAAAGGAGTGTACTGGAAAAGTGCACACATATGCTCATCAATGGGGCCTTCC 1002 |||||||| |||||||||||||||||||| || ||||||||||| ||||||||||||||| Sbjct 994 AAGGGAGCTAAAGGAGTGTACTGGAAAAGCGCTCACATATGCTCGTCAATGGGGCCTTCC 1053 Query 1003 ATCAAGTTGAACATAAGGGAGATGATTGACTTCAAGCCTCCCGCTGCGAACTAACC-AGC 1061 ||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| | | | Sbjct 1054 ATCAAGTTGAACATAAGAGAGATGATAGACTTCAAGCCTCCCACTGCGAACTAATCGA-C 1112 Query 1062 AACCGC-ATCTGTAAAT 1077 ||| || || ||||||| Sbjct 1113 AAC-GCCATTTGTAAAT 1128 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52760772795 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5