BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg939454 Length=730 Score E Sequences producing significant alignments: (Bits) Value AT3G63540.1 | Symbols: | Mog1/PsbP/DUF1795-like photosystem II... 750 0.0 > AT3G63540.1 | Symbols: | Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein | chr3:23459182-23459804 REVERSE LENGTH=623 Length=623 Score = 750 bits (406), Expect = 0.0 Identities = 416/421 (99%), Gaps = 0/421 (0%) Strand=Plus/Plus Query 294 GAAGGGTGGAAGGAGAGGCTGGTGTCGAAGGTGGAGAAGGGGACAAACGGAACAGACAGC 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17 GAAGGGTGGAAGGAGAGGCTGGTGTCGAAGGTGGAGAAGGGGACAAACGGAACAGACAGC 76 Query 354 GAATTCTACAACCCGAAGAAGAAGACGGAGAAGGAGTACCTGACATTCCTGGCGGGATTC 413 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 77 GAATTCTATAACCCGAAGAAGAAGACGGAGAAGGAGTACCTGACATTCCTGGCGGGATTC 136 Query 414 AGACAGCTGGCGCCGAGGGATGTGATTCTGAACAACCTTGCCTTGTCGGACGTGGAGCTG 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 137 AGACAGCTGGCGCCGAGGGATGTGATTCTGAACAACCTTGCCTTGTCGGACGTGGAGCTG 196 Query 474 CAGGATTTGATAGCCGGCGCCGACAAAGTGGTGTCGGAGGAGAGGAAGGACGAGACAGGG 533 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 197 CAGGATTTGATAGCCGGCGCGGACAAAGTGGTGTCGGAGGAGAGGAAGGACGAGACAGGG 256 Query 534 CAGGTCTACTATCTGTACGAGATCGATGGGGTTGGAAAGCACAGCCTGATCACAGTCACT 593 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 257 CAGGTCTACTATCTGTACGAGATAGATGGGGTTGGAAAGCACAGCCTGATCACAGTCACT 316 Query 594 TGCGCCAAGAACAAGCTCTACGCCCATTTCGTAAACGCCCCTGCGCCCGAGTGGAACCGC 653 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 317 TGCTCCAAGAACAAGCTCTACGCCCATTTCGTAAACGCCCCTGCGCCCGAGTGGAACCGC 376 Query 654 GACCAGGATACATTAACCCACCTTCGCGACTCCTTCAAGACTGTCTCTTCTTCTTGAAAT 713 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 377 GACCACGATACATTAACCCACCTTCGCGACTCCTTCAAGACTGTCTCTTCTTCTTGAAAT 436 Query 714 T 714 | Sbjct 437 T 437 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35415073635 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5