BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939454

Length=730
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G63540.1 | Symbols:  | Mog1/PsbP/DUF1795-like photosystem II...   750    0.0  


> AT3G63540.1 | Symbols:  | Mog1/PsbP/DUF1795-like photosystem 
II reaction center PsbP family protein | chr3:23459182-23459804 
REVERSE LENGTH=623
Length=623

 Score =  750 bits (406),  Expect = 0.0
 Identities = 416/421 (99%), Gaps = 0/421 (0%)
 Strand=Plus/Plus

Query  294  GAAGGGTGGAAGGAGAGGCTGGTGTCGAAGGTGGAGAAGGGGACAAACGGAACAGACAGC  353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  17   GAAGGGTGGAAGGAGAGGCTGGTGTCGAAGGTGGAGAAGGGGACAAACGGAACAGACAGC  76

Query  354  GAATTCTACAACCCGAAGAAGAAGACGGAGAAGGAGTACCTGACATTCCTGGCGGGATTC  413
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  77   GAATTCTATAACCCGAAGAAGAAGACGGAGAAGGAGTACCTGACATTCCTGGCGGGATTC  136

Query  414  AGACAGCTGGCGCCGAGGGATGTGATTCTGAACAACCTTGCCTTGTCGGACGTGGAGCTG  473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  137  AGACAGCTGGCGCCGAGGGATGTGATTCTGAACAACCTTGCCTTGTCGGACGTGGAGCTG  196

Query  474  CAGGATTTGATAGCCGGCGCCGACAAAGTGGTGTCGGAGGAGAGGAAGGACGAGACAGGG  533
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  197  CAGGATTTGATAGCCGGCGCGGACAAAGTGGTGTCGGAGGAGAGGAAGGACGAGACAGGG  256

Query  534  CAGGTCTACTATCTGTACGAGATCGATGGGGTTGGAAAGCACAGCCTGATCACAGTCACT  593
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  257  CAGGTCTACTATCTGTACGAGATAGATGGGGTTGGAAAGCACAGCCTGATCACAGTCACT  316

Query  594  TGCGCCAAGAACAAGCTCTACGCCCATTTCGTAAACGCCCCTGCGCCCGAGTGGAACCGC  653
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  317  TGCTCCAAGAACAAGCTCTACGCCCATTTCGTAAACGCCCCTGCGCCCGAGTGGAACCGC  376

Query  654  GACCAGGATACATTAACCCACCTTCGCGACTCCTTCAAGACTGTCTCTTCTTCTTGAAAT  713
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  377  GACCACGATACATTAACCCACCTTCGCGACTCCTTCAAGACTGTCTCTTCTTCTTGAAAT  436

Query  714  T  714
            |
Sbjct  437  T  437



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35415073635


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5