BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939472

Length=518
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G01880.1 | Symbols:  | RING/U-box superfamily protein | chr5...   780    0.0  


> AT5G01880.1 | Symbols:  | RING/U-box superfamily protein | chr5:338899-340253 
FORWARD LENGTH=1355
Length=1355

 Score =  780 bits (422),  Expect = 0.0
 Identities = 490/522 (94%), Gaps = 8/522 (2%)
 Strand=Plus/Plus

Query  3    GACACCGGAGACTCCTCGGATGCATCGACTGCTACTGGAATCCCACGGCGGCGGGAACGA  62
            ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  100  GACGCCGGAGACTCATCGGATGCATCGACTGCTACTGGAATCCCACGGCGGCGGGAACGA  159

Query  63   GACGAGC-G--GCGGCGGCGGAGATGGGTAC-CTGAGAGACATGAACTTCGACGCAAACA  118
            ||||||| |  ||||||| |||||||||||| | ||| ||||||||||||||||||||||
Sbjct  160  GACGAGCGGAAGCGGCGGGGGAGATGGGTACAC-GAGGGACATGAACTTCGACGCAAACA  218

Query  119  TGGTGATCATACTTGCAGCTCTTCTGTGCGCGTTGATACTAGCGCTTGGGCTGAATTCGA  178
            |||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||
Sbjct  219  TGGTGATCATACTTGCGGCTCTTCTCTGCGCGCTGATACTAGCGCTTGGGCTGAATTCGA  278

Query  179  TTCTCCGATGCGCGATGCGATGCGGTTTCGGGTTATCATCCTCTGCGGCGGCAGGGACGG  238
            ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  279  TTCTCCGGTGCGCGATGCGATGCGGTTTCGGGTTATCATCCTCTGCGGCGGCGGGGACGG  338

Query  239  TGGCCGACAGAAG-TGGATTGAAGAAGAGAGAGCTGAAGAAGTTTCCTGTAGCTGCGTAC  297
            |||||||||| || |||||| ||||||||||| |||||||||||||| ||||||| ||||
Sbjct  339  TGGCCGACAG-AGCTGGATTAAAGAAGAGAGAACTGAAGAAGTTTCCAGTAGCTGAGTAC  397

Query  298  GGGTCGGGGGAAGTGAAGATAGCGGCGACGGAATGCGCAATCTGTTTGGGAGAATTCGCG  357
            |||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||
Sbjct  398  GGGTCGGGGGAAGTGAAGATAGCGGCGACGGAGTGCGCAATCTGTCTGGGGGAATTCGCG  457

Query  358  GACGGCGAGAGAGTGAGAGTTCTGCCGCCGTGTAATCACAGCTTCCACATGTCATGCATC  417
            ||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||
Sbjct  458  GACGGCGAGAGAGTGCGAGTACTGCCGCCGTGTAATCACAGTTTCCACATGTCATGCATC  517

Query  418  GACACGTGGCTTGTCTCTCACTCTTCATGTCCCAATTGTCGGTATTCACTCATCGAGGTC  477
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  518  GACACGTGGCTTGTCTCTCACTCTTCATGTCCCAATTGTCGGCATTCACTCATCGAGGTC  577

Query  478  CACGTGGTGGGATCAGAGTGATTTAATTATCGTCGTG-GGGT  518
            ||||||| ||| || |||||||||||||||||||| | ||||
Sbjct  578  CACGTGGCGGGGTCTGAGTGATTTAATTATCGTCGCGAGGGT  619



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24765434471


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5