BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg939472 Length=518 Score E Sequences producing significant alignments: (Bits) Value AT5G01880.1 | Symbols: | RING/U-box superfamily protein | chr5... 780 0.0 > AT5G01880.1 | Symbols: | RING/U-box superfamily protein | chr5:338899-340253 FORWARD LENGTH=1355 Length=1355 Score = 780 bits (422), Expect = 0.0 Identities = 490/522 (94%), Gaps = 8/522 (2%) Strand=Plus/Plus Query 3 GACACCGGAGACTCCTCGGATGCATCGACTGCTACTGGAATCCCACGGCGGCGGGAACGA 62 ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 100 GACGCCGGAGACTCATCGGATGCATCGACTGCTACTGGAATCCCACGGCGGCGGGAACGA 159 Query 63 GACGAGC-G--GCGGCGGCGGAGATGGGTAC-CTGAGAGACATGAACTTCGACGCAAACA 118 ||||||| | ||||||| |||||||||||| | ||| |||||||||||||||||||||| Sbjct 160 GACGAGCGGAAGCGGCGGGGGAGATGGGTACAC-GAGGGACATGAACTTCGACGCAAACA 218 Query 119 TGGTGATCATACTTGCAGCTCTTCTGTGCGCGTTGATACTAGCGCTTGGGCTGAATTCGA 178 |||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||| Sbjct 219 TGGTGATCATACTTGCGGCTCTTCTCTGCGCGCTGATACTAGCGCTTGGGCTGAATTCGA 278 Query 179 TTCTCCGATGCGCGATGCGATGCGGTTTCGGGTTATCATCCTCTGCGGCGGCAGGGACGG 238 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 279 TTCTCCGGTGCGCGATGCGATGCGGTTTCGGGTTATCATCCTCTGCGGCGGCGGGGACGG 338 Query 239 TGGCCGACAGAAG-TGGATTGAAGAAGAGAGAGCTGAAGAAGTTTCCTGTAGCTGCGTAC 297 |||||||||| || |||||| ||||||||||| |||||||||||||| ||||||| |||| Sbjct 339 TGGCCGACAG-AGCTGGATTAAAGAAGAGAGAACTGAAGAAGTTTCCAGTAGCTGAGTAC 397 Query 298 GGGTCGGGGGAAGTGAAGATAGCGGCGACGGAATGCGCAATCTGTTTGGGAGAATTCGCG 357 |||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||| Sbjct 398 GGGTCGGGGGAAGTGAAGATAGCGGCGACGGAGTGCGCAATCTGTCTGGGGGAATTCGCG 457 Query 358 GACGGCGAGAGAGTGAGAGTTCTGCCGCCGTGTAATCACAGCTTCCACATGTCATGCATC 417 ||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||| Sbjct 458 GACGGCGAGAGAGTGCGAGTACTGCCGCCGTGTAATCACAGTTTCCACATGTCATGCATC 517 Query 418 GACACGTGGCTTGTCTCTCACTCTTCATGTCCCAATTGTCGGTATTCACTCATCGAGGTC 477 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 518 GACACGTGGCTTGTCTCTCACTCTTCATGTCCCAATTGTCGGCATTCACTCATCGAGGTC 577 Query 478 CACGTGGTGGGATCAGAGTGATTTAATTATCGTCGTG-GGGT 518 ||||||| ||| || |||||||||||||||||||| | |||| Sbjct 578 CACGTGGCGGGGTCTGAGTGATTTAATTATCGTCGCGAGGGT 619 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24765434471 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5