BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939481
Length=617
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01790.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 843 0.0
> AT5G01790.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures;
EXPRESSED DURING: 13 growth stages; Has 121 Blast hits
to 121 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr5:304897-305696 REVERSE
LENGTH=800
Length=800
Score = 843 bits (456), Expect = 0.0
Identities = 567/619 (92%), Gaps = 13/619 (2%)
Strand=Plus/Plus
Query 1 TCTCACTCTCCAAAGACAACAATGCCAAACGCGGGATCTGAGCGGGGAGCTTCACTGTCA 60
||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| |||
Sbjct 53 TCTCACTCTCCCAAGACAATAATGCCAAACGCGGGATCTGAGCGGGCAGCTTCACTCTCA 112
Query 61 CTGAGAAAGCAAGACACGGCCACCTTCTCCGGTAAGTTACCGTCGACCAAACAACGCTTT 120
|||| |||||||||||| |||||||||||||||||| ||||||||||||||||||| |||
Sbjct 113 CTGAAAAAGCAAGACACCGCCACCTTCTCCGGTAAGCTACCGTCGACCAAACAACG-TTT 171
Query 121 TCGTCGCCGGCAACAGGAGCATCAGCTTGTCCTTCCTTTAGAATTTACTACTACGACGGA 180
| ||| ||| | | ||| | |||||||||||||||||||| |||||||||||||||
Sbjct 172 T--TCGTCGGTATC---AGC-T--GCTTGTCCTTCCTTTAGAATCTACTACTACGACGGA 223
Query 181 GCCGCCGGTTCCGTCCCTTTCGAATGGGAATCTCATCCAGGCACACCCAAACACCCATCC 240
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 224 GCCGCCGGTGCCGTCCCTTTCGAATGGGAATCTCATCCAGGCACACCCAAACACCCCTCC 283
Query 241 TCTGAGCTACCTACTCTGCCACCTCTCACTCCTCCGCCGTCTCATTTCTCTTTCTCCGGT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 TCTGAGCTACCTACTCTGCCACCTCTCACTCCTCCGCCGTCTCATTTCTCTTTCTCCGGC 343
Query 301 GACCAAATCCGCCGCCGTTCCAAAAACTCCACCAAGAAAATCCTCGCACTAATCCCGACC 360
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 344 GACCAAATCCGCCGCCGTTCCAAAAAGTCCACCAAGAAAATCCTCGCACTAATCCCGAC- 402
Query 361 AAG-CTCTTCTAGTTATCGGGCGATCATAGTAGCAAGGCCAAGAAACTGTCGGCATCGTC 419
||| ||||||| | ||||||||||||| | | | ||||| |||||||||||||| || ||
Sbjct 403 AAGGCTCTTCTGGCTATCGGGCGATCACAATGGTAAGGCTAAGAAACTGTCGGCTTCATC 462
Query 420 ACCACCATCTATGTCGGAGAGAGTGTTGATCGATGAGAATGAGTACGATCTGTTCAAGTT 479
|||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 463 ACCACCATCTCTGTCGGAGAGAGTGTTGATCGACGAAAATGAGTACGATCTGTTCAAGTT 522
Query 480 TCAGTCGGAAAGGAACGTCATGCGAAGATTTTCATCCTTCGACTCTTCTACTGACTACCC 539
||| | |||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 523 TCAAACAGAAAGGAATGTCATGCGAAGATTTTCATCCTTCGACTCTTCTGCTGACTACCC 582
Query 540 CATTCAGAGATCACAATCCACCTCTTGCTTCGGAATCCGCAGATGTTTCATCTACTAATT 599
|||||||||||||||||||| || |||||||||||||||||||||||| ||| ||||||
Sbjct 583 AATTCAGAGATCACAATCCACTTCCTGCTTCGGAATCCGCAGATGTTTCCTCTGCTAATT 642
Query 600 TCGCTAG-AAAATATGGAA 617
|||| | ||||| |||||
Sbjct 643 CCGCT-GCAAAATTTGGAA 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29738615024
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5