BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939499
Length=694
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01640.1 | Symbols: PRA1.B5 | prenylated RAB acceptor 1.B5 |... 928 0.0
AT4G00005.1 | Symbols: | PRA1 (Prenylated rab acceptor) family... 433 1e-120
> AT5G01640.1 | Symbols: PRA1.B5 | prenylated RAB acceptor 1.B5
| chr5:241383-242225 REVERSE LENGTH=843
Length=843
Score = 928 bits (502), Expect = 0.0
Identities = 633/692 (91%), Gaps = 25/692 (4%)
Strand=Plus/Plus
Query 8 AGAA-AAATATCGAATGGTGTCCACACATCCCCCTGTGCTTCCGATTTCCTCCA-C-C-A 63
|||| ||| ||||||||||||| ||| |||||||||| ||||| |||||| ||| | | |
Sbjct 100 AGAACAAA-ATCGAATGGTGTCAACAAATCCCCCTGTTCTTCCAATTTCCACCACCGCAA 158
Query 64 C---CACCA-C--TCAGCCTCCGATTGTAACCGCTGTGGTGGAATCGCAACCTCCAGCCG 117
| ||||| | |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 159 CAGACACCACCAATCAGCCTCCGATTGTAACCGCTGTGGTGGAATCGCAACCTCCAGTCG 218
Query 118 TCCGTGCATTTGTCAACGGCGTAACCGAGACGGTCCGTGGTGGCCTATCTCGTAGCCGTC 177
||||||||||||||||||| || |||||||||||| ||||||| ||||||||||||||||
Sbjct 219 TCCGTGCATTTGTCAACGGTGTGACCGAGACGGTCTGTGGTGGTCTATCTCGTAGCCGTC 278
Query 178 CGTGGTCAGAGCTCCTCGATCGATCCGCTTTCACCAAGCCTGACTCTCTCTCCGAGGCCG 237
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 279 CGTGGTCAGAGCTCCTCGATCGATCCGCTTTCACAAAGCCTGACTCTCTCTCCGAGGCCG 338
Query 238 CGACGCGATTCCGGAAGAATTCTTCCTATTTCAGGGTGAATTACGTCTGCATCGTCGCTC 297
||||||||||||||| ||||| || |||||||||||||||||||| ||||| |||||||
Sbjct 339 GGACGCGATTCCGGAAAAATTCCTCTTATTTCAGGGTGAATTACGTTTGCATTGTCGCTC 398
Query 298 TGATCCTCGGTTTCTCTCTTCTCGCCCACCCATTCTCGCTCATCCTCCTCCTATGCCTCG 357
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 399 TGATCCTTGGTTTCTCTCTTCTCGCCCACCCATTCTCTCTCATCCTCCTCCTATGTCTCG 458
Query 358 CCGCTTCCTGGCTCTTCCTCTACCTCTTCCGTCCATCAGATCGTCCTCTTGTCCTCTTCG 417
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 459 CCGCTTCCTGGCTCTTCCTCTACCTCTTCCGTCCATCAGATCGTCCTCTTATCCTCTTCG 518
Query 418 GCCGATCTTTCTCCGAATACGAAACTCTCGGTGGCCTGATCCTCTCCACGATCGCCGTGA 477
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 519 GCCGATCTTTCTCCGAATACGAAACTCTCGGTGGCCTAATCCTCTCCACGATCGCAGTGA 578
Query 478 TCTTCTTCACAAGCGTCGGATCTGTACTGATATCCGCTCTCATGATCGGAGTAGCAACGG 537
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 579 TCTTCTTCACAAGCGTCGGATCTGTATTGATATCCGCTCTCATGATCGGAATAGCAACAA 638
Query 538 TCTGCGTCCATGGCGCCTTTAGAGCTCCCGATGATCTCTTCCTGGACGAGCAAGATGC-T 596
|||| |||||||||||||||||||||||||||||||||||||| ||||| |||||| | |
Sbjct 639 TCTGTGTCCATGGCGCCTTTAGAGCTCCCGATGATCTCTTCCTCGACGAACAAGAT-CAT 697
Query 597 GCCGCCGTC-GGATTCCTCTCATTCATCGGTGT-CCC-CG--CC-----GTAGCACCCTC 646
|||||| || ||||||||||||||||||||||| ||| || || |||||||||||
Sbjct 698 GCCGCC-TCCGGATTCCTCTCATTCATCGGTGTTCCCGCGATCCCCTCTGTAGCACCCTC 756
Query 647 CGCCTCCTCAGCGCCATCCCCCGTATAA-TTA 677
|||||||||||| | |||||||| ||| |||
Sbjct 757 TGCCTCCTCAGCGGCTTCCCCCGTGTAAATTA 788
> AT4G00005.1 | Symbols: | PRA1 (Prenylated rab acceptor) family
protein | chr4:1180-1536 REVERSE LENGTH=357
Length=357
Score = 433 bits (234), Expect = 1e-120
Identities = 276/297 (93%), Gaps = 0/297 (0%)
Strand=Plus/Plus
Query 239 GACGCGATTCCGGAAGAATTCTTCCTATTTCAGGGTGAATTACGTCTGCATCGTCGCTCT 298
|||||||||| ||||||| || || ||||||||||||||||||||||||||| |||||||
Sbjct 3 GACGCGATTCTGGAAGAACTCCTCTTATTTCAGGGTGAATTACGTCTGCATCATCGCTCT 62
Query 299 GATCCTCGGTTTCTCTCTTCTCGCCCACCCATTCTCGCTCATCCTCCTCCTATGCCTCGC 358
|||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 63 GATCATCAGTTTCTCTCTTCCCGCCCACCCATTCTCGCTCATCCTCCTCCTATGCCTCGC 122
Query 359 CGCTTCCTGGCTCTTCCTCTACCTCTTCCGTCCATCAGATCGTCCTCTTGTCCTCTTCGG 418
|||||| ||||||||||||||||||||||||||||| ||||| |||||| ||||| ||||
Sbjct 123 CGCTTCATGGCTCTTCCTCTACCTCTTCCGTCCATCCGATCGACCTCTTATCCTCATCGG 182
Query 419 CCGATCTTTCTCCGAATACGAAACTCTCGGTGGCCTGATCCTCTCCACGATCGCCGTGAT 478
||||||||||||||||||||| |||||||||||| |||| || |||||||||||||||||
Sbjct 183 CCGATCTTTCTCCGAATACGAGACTCTCGGTGGCTTGATACTATCCACGATCGCCGTGAT 242
Query 479 CTTCTTCACAAGCGTCGGATCTGTACTGATATCCGCTCTCATGATCGGAGTAGCAAC 535
||| ||||| ||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 243 CTTTTTCACCAGCGTCGGATCTGTACTGATATCCGCTCTCATGATCGGAATAACAAC 299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33606644343
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5