BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939527
Length=988
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01410.1 | Symbols: PDX1, ATPDX1.3, RSR4, PDX1.3, ATPDX1 | A... 1683 0.0
> AT5G01410.1 | Symbols: PDX1, ATPDX1.3, RSR4, PDX1.3, ATPDX1 |
Aldolase-type TIM barrel family protein | chr5:172318-173614
REVERSE LENGTH=1297
Length=1297
Score = 1683 bits (911), Expect = 0.0
Identities = 962/987 (97%), Gaps = 2/987 (0%)
Strand=Plus/Plus
Query 3 TCTCTTCAATCTCCGATAATGGAAGGAACCGGCGTTGTGGCGGTCTACGGTAACGGTGCG 62
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 92 TCTCTTCAATCTCCGATAATGGAAGGAACCGGCGTTGTGGCGGTGTACGGTAACGGTGCG 151
Query 63 ATAACGGAGGCTAAGAAATCTCCCTTCTCCGTTAAGGTCGGTTTGGCTCAGATGCTCCGT 122
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 152 ATAACGGAGGCGAAGAAATCTCCCTTCTCCGTGAAGGTCGGTTTGGCTCAGATGCTCCGT 211
Query 123 GGTGGTGTTATCATGGATGTCGTCAACGCCGAGCAAGCTCGTATCGCCGAGGAAGCTGGT 182
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 212 GGTGGTGTTATCATGGATGTCGTCAACGCCGAGCAAGCTCGTATCGCCGAGGAGGCTGGT 271
Query 183 GCTTGCGCCGTCATGGCTTTGGAGCGTGTTCCTGCTGATATTCGTGCTCAAGGAGGCGTT 242
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 272 GCTTGCGCCGTCATGGCTTTGGAGCGTGTTCCTGCTGATATCCGCGCTCAAGGAGGCGTC 331
Query 243 GCTCGTATGAGCGATCCACAAATGATTAAAGAAATCAAACAGGCCGTTACGATTCCGGTG 302
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 332 GCTCGTATGAGCGATCCACAAATGATTAAAGAAATCAAACAAGCCGTTACGATTCCGGTG 391
Query 303 ATGGCTAAGGCTAGGATTGGTCATTTCGTTGAAGCTCAAATCCTTGAAGCAATTGGAATC 362
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 392 ATGGCTAAGGCTAGGATTGGTCATTTCGTTGAAGCTCAGATCCTTGAAGCAATTGGAATC 451
Query 363 GATTACATCGATGAGAGCGAGGTTTTGACTCTTGCTGATGAAGATCATCACATCAACAAG 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 GATTACATCGATGAGAGCGAGGTTTTGACTCTTGCTGATGAAGATCATCACATCAACAAG 511
Query 423 CATAATTTCCGGATCCCTTTCGTTTGCGGTTGCCGGAATCTCGGCGAGGCTTTGAGGAGG 482
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 512 CATAATTTCCGGATCCCGTTCGTTTGCGGTTGCCGGAATCTCGGCGAGGCTCTGAGGAGG 571
Query 483 ATCCGTGAAGGTGCGGCGATGATAAGGACCAAAGGTGAAGCTGGAACTGGTAACATTATT 542
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 572 ATCCGTGAAGGTGCGGCGATGATTAGGACCAAAGGTGAAGCTGGAACCGGTAACATTATT 631
Query 543 GAAGCTGTGAGGCATGTGAGGTCTGTTAATGGTGACATTAGGGTTTTGCGAAACATGGAT 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 GAAGCTGTGAGGCATGTGAGGTCTGTTAATGGTGACATTAGGGTTTTGCGAAACATGGAT 691
Query 603 GATGATGAGGTTTTCACTTTCGCTAAGAAATTAGCCGCCCCGTACGATCTCGTGATGCAG 662
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 692 GATGATGAGGTTTTCACTTTCGCTAAGAAATTAGCCGCTCCGTACGATCTCGTGATGCAG 751
Query 663 ACTAAGCAGCTTGGTCGTCTTCCTGTAGTCCAATTCGCCGCAGGTGGAGTGGCTACTCCG 722
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 752 ACTAAGCAGCTTGGTCGTCTTCCTGTAGTCCAATTCGCCGCCGGTGGAGTGGCTACTCCG 811
Query 723 GCTGATGCAGCTCTCATGATGCAGCTCGGATGTGATGGTGTCTTTGTAGGTTCTGGTATC 782
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 812 GCTGATGCAGCTCTCATGATGCAGCTTGGATGTGATGGTGTCTTTGTTGGTTCTGGTATC 871
Query 783 TTCAAGAGCGGTGACCCAGCGCGTCGTGCACGTGCCATTGTTCAGGCTGTGACTCATTAC 842
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 872 TTCAAGAGCGGTGACCCAGCTCGTCGTGCACGTGCCATTGTTCAGGCTGTGACTCATTAC 931
Query 843 AGTGACCCTGAGATGCTTGTGGAGGTGAGCTGTGGACTTGGAGAAGCCATGGTTGGGATC 902
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 932 AGTGACCCTGAGATGCTTGTGGAGGTGAGCTGTGGGCTTGGAGAAGCCATGGTTGGGATC 991
Query 903 AATCTCAATGATGAGAAGGTTGAGAGGTTCGCTAATCGCTCCGAGTGATCAAAGAACA-A 961
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 992 AATCTCAACGATGAGAAGGTTGAGAGGTTCGCTAATCGCTCCGAGTGATCAAAGAA-ATA 1050
Query 962 AAAGGTAAAATTTGTCAGACTAAATGG 988
||||||||||| | |||||| ||||||
Sbjct 1051 AAAGGTAAAATATCTCAGACGAAATGG 1077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48375483561
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5