BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg939592 Length=434 Score E Sequences producing significant alignments: (Bits) Value AT5G02160.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 680 0.0 > AT5G02160.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to 121 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:426226-427297 FORWARD LENGTH=829 Length=829 Score = 680 bits (368), Expect = 0.0 Identities = 413/434 (95%), Gaps = 5/434 (1%) Strand=Plus/Plus Query 1 TCACTTAAAAACCCTAAATCATGGCGATCGCACCGGCAATGCAGACGACGTTCGTGTCAT 60 |||||| |||||||||||| ||| |||||||||||||| ||||||||||||||||||||| Sbjct 148 TCACTT-AAAACCCTAAATTATGACGATCGCACCGGCATTGCAGACGACGTTCGTGTCAT 206 Query 61 CGACCAGCTTCCTGAAACATTCTTCTTCGTGGGGATCATCATCCTCACCGAACAATGTGA 120 | |||| ||||||||||||||||||||||||||||||| | | |||||||||||||||| Sbjct 207 CAACCAACTTCCTGAAACATTCTTCTTCGTGGGGATCA-C--CATCACCGAACAATGTGA 263 Query 121 TTCTTCCCAAAAACAAGAGATCGTCTTCCTCCGTAGTTGTCGCCGCCGTCGGTGATGTCT 180 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 264 TTCTTCCCAAAAACAAGAGATCTTCTTCCTCCGTAGTTGTCGCCGCCGTCGGTGATGTCT 323 Query 181 CTTCTGACGGAACAATCTACTTAATCGGCGGAGCCATCGCCGTTGCACTCGTCGGAACTG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 324 CTTCTGACGGAACAATCTACTTAATCGGCGGAGCCATCGCCGTTGCACTCGTCGGAACTG 383 Query 241 CATTTCCGATCCTCTTCAAACGCAAAGACACGTGTCCGGAATGTGACGGAGCAGGATTTG 300 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 384 CATTCCCGATCCTCTTCAAACGCAAAGACACGTGTCCGGAATGTGACGGAGCAGGATTTG 443 Query 301 TGAGGAAAGGAGGAGTGACTCTGAGAGCGAATGCCGCACGCAAGGATCTTCCTCAGATCG 360 |||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||| Sbjct 444 TGAGGAAAGGAGGAGTGACTCTGAGAGCCAACGCCGCACGGAAGGATCTTCCTCAGATCG 503 Query 361 TTTGTGCTAACTGCAATGGACTGGGAAAGCTTAACCAGATTGATAAATCATAAGAGAGTC 420 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| || Sbjct 504 TTTGTGCTAACTGCAATGGACTCGGAAAGCTTAACCAGATTGATAAATCATAAGTCT-TC 562 Query 421 TTCATATTTATGTA 434 ||||||| |||||| Sbjct 563 TTCATATATATGTA 576 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20609777090 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5